View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18494_high_11 (Length: 420)

Name: NF18494_high_11
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18494_high_11
NF18494_high_11
[»] chr4 (2 HSPs)
chr4 (70-120)||(29428316-29428366)
chr4 (70-119)||(49632636-49632685)
[»] chr1 (3 HSPs)
chr1 (70-120)||(49960808-49960858)
chr1 (70-119)||(35719577-35719626)
chr1 (70-120)||(50378361-50378411)
[»] chr7 (4 HSPs)
chr7 (70-120)||(41253075-41253125)
chr7 (70-114)||(41252820-41252864)
chr7 (70-120)||(15969367-15969417)
chr7 (70-120)||(34988707-34988757)
[»] chr2 (2 HSPs)
chr2 (70-119)||(44229687-44229736)
chr2 (70-120)||(15782931-15782981)
[»] chr8 (1 HSPs)
chr8 (70-114)||(10186075-10186119)
[»] chr5 (1 HSPs)
chr5 (70-120)||(7332326-7332376)


Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 29428366 - 29428316
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  29428366 ttttctaggtttagttgttgcaaacctaataagattaaagagtaagggata 29428316  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 49632636 - 49632685
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggat 119  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  49632636 ttttttaggtttagttgttgcaaacctaataagattaaagagtaagggat 49632685  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 49960808 - 49960858
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  49960808 ttttctaggtttagttgttgcaaacctaataagattaaagagtaagggata 49960858  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 35719626 - 35719577
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggat 119  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35719626 ttttttaggtttaattgttgcaaacctaataagattaaagagtaagggat 35719577  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 50378411 - 50378361
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  50378411 ttttctaggtttagttgttgcaaacctaataagattaaagagtaagagata 50378361  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 41253075 - 41253125
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  41253075 ttttttaggtttagttgttgcaaacctaataagattaaagagtaagggata 41253125  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 41252820 - 41252864
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaa 114  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  41252820 ttttctaggtttagttgttgcaaacctaataagattaaagagtaa 41252864  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 15969367 - 15969417
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    |||| |||||||| ||||| ||||||||||||||||||||| ||| |||||    
T  15969367 ttttttaggtttagttgttgcaaacctaataagattaaagaataaaggata 15969417  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 34988707 - 34988757
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    ||||||||||||| || || |||||||||||| |||||||||||| |||||    
T  34988707 ttttctaggtttagtttttgcaaacctaataatattaaagagtaaaggata 34988757  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 44229736 - 44229687
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggat 119  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  44229736 ttttctaggtttagttgttgcaaacctaataagattaaagagtaaaggat 44229687  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 15782931 - 15782981
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    ||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  15782931 ttttctaagtttcgttgttgcaaacctaataagattaaagagtaagggata 15782981  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 10186075 - 10186119
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaa 114  Q
    |||| |||||||||||||| |||||||||||||||||||||||||    
T  10186075 ttttttaggtttaattgttgcaaacctaataagattaaagagtaa 10186119  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 7332326 - 7332376
Alignment:
Q  70 ttttctaggtttaattgtttcaaacctaataagattaaagagtaagggata 120  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||||||||    
T  7332326 ttttttaggtttagttgttgcaaacctaataaaattaaagagtaagggata 7332376  T

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