View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_12 (Length: 408)
Name: NF18494_high_12
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 25 - 392
Target Start/End: Complemental strand, 42467412 - 42467045
Alignment:
| Q |
25 |
ttaatctctcgattacattgagtttacatttcactttcagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaa |
124 |
Q |
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| T |
42467412 |
ttaatctctcgattacattgagtttacatttcactttcagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaa |
42467313 |
T |
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| Q |
125 |
tatataaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttattccag |
224 |
Q |
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| T |
42467312 |
tatataaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttagtccag |
42467213 |
T |
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| Q |
225 |
caccccagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaa |
324 |
Q |
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| T |
42467212 |
caccccagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaa |
42467113 |
T |
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| Q |
325 |
tgcttggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
392 |
Q |
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| T |
42467112 |
tgcttggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
42467045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 384
Target Start/End: Original strand, 3183511 - 3183662
Alignment:
| Q |
233 |
ttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggt |
332 |
Q |
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| T |
3183511 |
ttggaaggagcaacattccatgcaataatagtctccttagtggtgtatgaagtaagcctgaaagaaagagcttgaccacctagtgttgcaaatgcttggt |
3183610 |
T |
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| Q |
333 |
aagaagcaccccaattgtggctcatgctaatccatcctgttctacttccttt |
384 |
Q |
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| T |
3183611 |
aggaagcaccccagttatggctcatcttaatccatcctgttctgcttccttt |
3183662 |
T |
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