View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_13 (Length: 387)
Name: NF18494_high_13
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 31784841 - 31785217
Alignment:
| Q |
11 |
cagagacaaacagatgatgaaaactttgaacatgtctcaactgagaaccaaaacctttggttgcaagatttgaataatcaggttgatgaaacagttgttt |
110 |
Q |
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| T |
31784841 |
cagaaacagacagatgatggaaactttgaacatgtctcaactgagaaccaaaacctttggttgcaagatttgtataatcaggttgatgaaacagttgttt |
31784940 |
T |
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| Q |
111 |
ttaaaccatatgattttgattcccttgatgatagagtgttgaaattggtaagaaataacttcaacaaaattcttggatccgagtgtgccttacaaatcca |
210 |
Q |
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| T |
31784941 |
ttaaaccatatgattttgattcccttgatgatagagtgttgaaattggtaagaaataacttcaacaaaattcttggatccgagtgtgccttacaaatcca |
31785040 |
T |
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| Q |
211 |
aacagaagtcatggatcaattgcttgcagctgcatacgtctcggacagtgatacggaggtggagaattgggctcagcgagttctctgtggtggattcact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||| |
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| T |
31785041 |
aacagaagtcatggatcaattgcttgcagctgcatacgtctcggacagtgatacggaggtggagaactgggttcagcaagttctctatggtggattcact |
31785140 |
T |
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| Q |
311 |
gaagtgcggagaagatacaatctcaccgccagttctattgtgaaacttgttacgtgtccagagcaagcttcaagtgt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31785141 |
gaagtgcggagaagatacaatctcaccgccagttctattgtgaaacttgttacatgtccagagcaagcttcaagtgt |
31785217 |
T |
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