View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18494_high_14 (Length: 382)
Name: NF18494_high_14
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 47267824 - 47268195
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
47267824 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaagagcggtgtttatttacaactataaggtcttgtgttgtttcagatgtaact |
47267923 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47267924 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
47268023 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47268024 |
tcccacataagaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
47268123 |
T |
|
| Q |
301 |
tggtaaacaaaattaacctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtctgtg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47268124 |
tggtaaacaaaattaacctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtg |
47268195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 47299031 - 47298719
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |||||||| | ||| |
|
|
| T |
47299031 |
agttacagaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgact |
47298932 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| | | | ||||||| |||| ||||||||||| | ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
47298931 |
cgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaccttttcctggagcaacctatatcg |
47298832 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
||||| ||| |||| || ||||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
47298831 |
tcccatataagaatataaaaggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgct |
47298732 |
T |
|
| Q |
301 |
tggtaaacaaaat |
313 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
47298731 |
tggtaaccaaaat |
47298719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47283789 - 47284133
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || ||||||||||||| |||| |||||| |||| ||||| | ||| |
|
|
| T |
47283789 |
agttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacagtaagatcgtgtgttgtatcagacttgact |
47283888 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| |||| ||||||| |||| |||||||||||||| ||||||||||||| | |||| |||||||||| ||||| ||||||||| | ||||| | |
|
|
| T |
47283889 |
cgtgctaagtacgcagaagtgaatttcggatggggtgaggcggtgtatggtggagtggtaaaaggtggggctggacctttacctggagcaacgtatataa |
47283988 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
47283989 |
tcccacataagaatgcagaaggagaagaaggtttaatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtt |
47284088 |
T |
|
| Q |
301 |
tggtaaacaaaattaacctaaagcaagtggttcctagttttgtcat |
346 |
Q |
| |
|
|||||| |||||| |||||| | | | ||| ||||||||||||||| |
|
|
| T |
47284089 |
tggtaatcaaaatcaacctacaacgattgg-tcctagttttgtcat |
47284133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47279196 - 47279540
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || ||||||||||||| ||||| || ||| |||| ||||| | ||| |
|
|
| T |
47279196 |
agttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacaataagatcttgtgttgtatcagacttgact |
47279295 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| |||| ||||||| ||||||||||||||||||| ||||||||||| | | ||| ||| ||| |||||||| ||| ||||| | | ||||| |
|
|
| T |
47279296 |
cgtgctaagtacgcagaagtgaattttggatggggtgaggcggtgtatggtggggtggtaaattgtgtggccgggcctttacctagagcaacgtttatca |
47279395 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
47279396 |
tcccacataagaatgcagaaggagaagaaggtttgatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtt |
47279495 |
T |
|
| Q |
301 |
tggtaaacaaaattaacctaaagcaagtggttcctagttttgtcat |
346 |
Q |
| |
|
|||||| |||||| |||||| | ||| ||| |||||||||||||| |
|
|
| T |
47279496 |
tggtaaccaaaatcaacctacaacaattgg-gcctagttttgtcat |
47279540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 47292424 - 47292105
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||||| ||||||| ||| || | |||||| | ||| |
|
|
| T |
47292424 |
agttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtgttatctcagatttgact |
47292325 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| | | | ||||||| ||||||| |||||||| | ||||||||||||| ||||||| |||||||||| | ||||||||| || |||||||| |
|
|
| T |
47292324 |
cgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaacatttcctggatcaacctatatcg |
47292225 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
||||| ||| |||| || | ||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
47292224 |
tcccatataagaatataaatggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgct |
47292125 |
T |
|
| Q |
301 |
tggtaaacaaaattaaccta |
320 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
47292124 |
tggtaaccaaaattatccta |
47292105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 47242920 - 47243239
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||||||||||| || |||||||||||||| ||| | ||||| || || ||| ||| |
|
|
| T |
47242920 |
agttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaactggaagaacttgtatagtgtcggattggact |
47243019 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| || || ||||||| |||| ||||||||||| | | |||||||||| | |||| |||| ||| ||| || ||||| | ||||||| |
|
|
| T |
47243020 |
cgtgctaatttctcagaagtgaatttcggatggggtgaaacaatatatggtggagtagtaaaaggtggaattggatcttatcttggaggaacctatattg |
47243119 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
|||| |||| ||||| | ||||||||||||| || ||||||| | |||| ||| || ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47243120 |
tcccgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgct |
47243219 |
T |
|
| Q |
301 |
tggtaaacaaaattaaccta |
320 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
47243220 |
tggtaaccaaaattatccta |
47243239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 320
Target Start/End: Original strand, 47257161 - 47257366
Alignment:
| Q |
115 |
agaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaat |
214 |
Q |
| |
|
||||||| |||| ||||||||||| || |||||||||||||| |||||| |||| ||| |||||| ||| | | ||| | | || | |||| |||| |
|
|
| T |
47257161 |
agaagtgaatttcggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttcttgggggaacctttcttgtcacgcataagaat |
47257260 |
T |
|
| Q |
215 |
gtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaatt |
314 |
Q |
| |
|
| | ||||||||||||| || ||||||| | |||| ||| | ||||| |||||||||||||| ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
47257261 |
gcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgttaaggagttagatgatatgcttggtaaccaaaatt |
47257360 |
T |
|
| Q |
315 |
aaccta |
320 |
Q |
| |
|
| |||| |
|
|
| T |
47257361 |
atccta |
47257366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 20519702 - 20519901
Alignment:
| Q |
107 |
aagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccac |
206 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||| || || |||||| |
|
|
| T |
20519702 |
aagttcagagaagtgaattttggatggggtgaggcgaagtatggtggagttgcaaaagctggggctgggggttttcgtggagcaaccatcattgtcccac |
20519801 |
T |
|
| Q |
207 |
atatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaa |
306 |
Q |
| |
|
||| |||| | || |||| ||||||| ||||||| | ||| |||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20519802 |
ataagaattcaaaacaagaaaaaggtttaatattaccaatttctttgccttatgaagatatgaagaggtttgctaaagagttagatgagatgcttggtaa |
20519901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 32731587 - 32731900
Alignment:
| Q |
1 |
agttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggcgtttatttacaactataaggtcgtgtattgtttcagatgtaact |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||||||||||||| || ||||||||||||| ||| | ||||| || |||||| ||| |
|
|
| T |
32731587 |
agttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaaccggaagaacttgtatggtgtcagattggact |
32731686 |
T |
|
| Q |
101 |
cgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatca |
200 |
Q |
| |
|
||| || ||| ||||||| |||| ||||||||||| | |||||||||||| | |||| |||| ||| ||| || ||||| | ||||||| |
|
|
| T |
32731687 |
cgtgctaatttatcagaagtgaatttcggatggggtgaaacaatgtatggtggagtagtaaaaggtggaattggatcttatcttggaggaacctatattg |
32731786 |
T |
|
| Q |
201 |
tcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgct |
300 |
Q |
| |
|
|||| |||| ||||| | ||||||||||||| || ||||| | | |||| ||| || ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32731787 |
tcccgcataagaatgcaaaaggagaagaagggttaatatttccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttagatgatatgct |
32731886 |
T |
|
| Q |
301 |
tggtaaacaaaatt |
314 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
32731887 |
tggtaaccaaaatt |
32731900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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