View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_16 (Length: 341)
Name: NF18494_high_16
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_16 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 2823 - 2496
Alignment:
| Q |
1 |
ttcttattttcgggtctgtggtcaaaacatgaacgtcacattggagtatgttttctttttcacccatttgcctattataggccgatcaattgtcacaatt |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||| || |||| |||||||| ||||| |
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| T |
2823 |
ttcttattttcgggtctgtagtcaaaacatgaacgtcacattggaagacgttttgtttttgacccatttgcctattacagaccgaccaattgtcccaatt |
2724 |
T |
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| Q |
101 |
aacagtaaagacttacaagttttcgatcgaattttttcaatnnnnnnnnnnncttagcctactcgagttgagaggtatttattgtgatagtgatagaaat |
200 |
Q |
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| T |
2723 |
aatagtaaagacttacaggctttcgatcaaattttttcaataaaaaaaaaa-cttagcttattcgagttgagaggtatttgttgtgatagtgatagaaat |
2625 |
T |
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| Q |
201 |
gtagatgtgaggatcaagtccatcctcctcataattgtgacatgtctgatttgcccaaatgggaatggataaatttgatatacttcttacattcaatatg |
300 |
Q |
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| T |
2624 |
gtagatgtgaggatcaaggccatcctcctcataattgtgacgtgcctgatttacccaaatgggaatgaacaaatttgctatacttcttacgttcaatata |
2525 |
T |
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| Q |
301 |
ttgaaaatttgaaagaaattaactcatat |
329 |
Q |
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| T |
2524 |
ttgaaaatttggaagaagttaactcatat |
2496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 24679303 - 24679588
Alignment:
| Q |
1 |
ttcttattttcgggtctgtggtcaaaacatgaacgtcacattggagtatgttttctttttcacccatttgcctattataggccgatcaattgtcacaatt |
100 |
Q |
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|||||||||||| ||| |||||||||||||||||||| |||||||| ||||||| ||||| || |||||||||| || ||| ||| |||||| | ||||| |
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| T |
24679303 |
ttcttattttcgagtcagtggtcaaaacatgaacgtcgcattggaggatgttttgtttttgacacatttgcctactacaggtcgaccaattgcctcaatt |
24679402 |
T |
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| Q |
101 |
aacagtaaagacttacaagttttcgatcgaattttttcaatnnnnnnnnnnncttagcctactcgagttgagaggtatttattgtgatagtgatagaaat |
200 |
Q |
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| T |
24679403 |
aacagtaaagacttacaagcttttgattgaattttttcaat---aaaaaaaacttagcctactcgagttgaaaggtatttgttgtgatagtgatagaa-- |
24679497 |
T |
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| Q |
201 |
gtagatgtgaggatcaagtccatcctcctcataattgtgacatgtctgatttgcccaaatgggaatggataaatttgatatacttcttacattca |
295 |
Q |
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||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||| |||| |
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| T |
24679498 |
----atgtgaggatcaagttcatcctcctcgtgattgtgacatgcctgatttgcccaaatgggaatgaataaattttctatatttcttacgttca |
24679588 |
T |
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