View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18494_high_18 (Length: 310)

Name: NF18494_high_18
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18494_high_18
NF18494_high_18
[»] chr4 (2 HSPs)
chr4 (6-288)||(11592401-11592683)
chr4 (6-288)||(11645436-11645718)
[»] chr1 (1 HSPs)
chr1 (161-273)||(37180943-37181056)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 11592401 - 11592683
Alignment:
Q  6 catgtcgaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg 105  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592401 catgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg 11592500  T
Q  106 tcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatc 205  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11592501 tcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatc 11592600  T
Q  206 aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11592601 aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttc 11592683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 11645718 - 11645436
Alignment:
Q  6 catgtcgaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg 105  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645718 catgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg 11645619  T
Q  106 tcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatc 205  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11645618 tcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatc 11645519  T
Q  206 aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11645518 aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttc 11645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 37181056 - 37180943
Alignment:
Q  161 attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc 259  Q
    |||||||||||||||| ||||||| || |||||||||    || |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||      
T  37181056 attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat 37180957  T
Q  260 gcttcggtcacgtt 273  Q
    |  |||||||||||    
T  37180956 gtctcggtcacgtt 37180943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University