View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_19 (Length: 305)
Name: NF18494_high_19
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 25512734 - 25513018
Alignment:
| Q |
9 |
gaagaaaatcagaaactat-ggcagattctacaaggaattgcgaacggta--accatttcgcagaatgggatgtgcaagtgtaaagatgtgtgttagtga |
105 |
Q |
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| T |
25512734 |
gaagaaaatcagaaaccatcggcagattctacaaggaattgcgagcggtataaccatttcgcagaatgggatgttcaagtgtaatgatgtgtgttagtga |
25512833 |
T |
|
| Q |
106 |
acacctaatagctgcaaaatgtaacacttagttcctgtttcacatagtagtaacaaatcactaaagataaaaccattttaacaagaaaattttctccctt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
25512834 |
acacctaatagctgcaaaatgtaacacttagttcctgtttcacatagtagtaacaaatcactaaagataaaactattttaacaagaaatttttttccctt |
25512933 |
T |
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| Q |
206 |
ccctctctgtatgaacttaaacccctaatgttaaagaacatgattgaaactggtttggattcataatgaaaaagaaattataact |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25512934 |
ccctctctgtatgaacttaaacccctaatgttaaagaacatgattgaaactggttcggattcataatgaaaaagaaattataact |
25513018 |
T |
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