View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_25 (Length: 245)
Name: NF18494_high_25
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 7352888 - 7352674
Alignment:
| Q |
16 |
atcaccaagcataaggatgcaactgttgctactgcttgaagtactagatgaagatcatgaataataataatacatttatcctttatcggttttcatgttt |
115 |
Q |
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| T |
7352888 |
atcaccaagcataaggatgcaactgttgctactgcttgaagtattagatgaagatcatgaataataatattacatttatcctttgtcggttttcatgttt |
7352789 |
T |
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| Q |
116 |
ttattatgcttgaaaataaattgttgcattggcctacttcaattgactagtgagtagtgactaaaatttgtttgtatcattatgataatttgatgtaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352788 |
ttattatgcttgaaaataaattgttgcattggcctacttcaattgactagtgagtagtgactaaaatttgtttgtatcattatgataatttgatgtaaat |
7352689 |
T |
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| Q |
216 |
gccatggtccctttg |
230 |
Q |
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||||||||||||||| |
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| T |
7352688 |
gccatggtccctttg |
7352674 |
T |
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