View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_high_27 (Length: 225)
Name: NF18494_high_27
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_27 |
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| [»] scaffold0300 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 24679149 - 24678998
Alignment:
| Q |
51 |
tcatctaatgttgaccataatgcgtacatagttgtcaatttagaagttccttttgtttccattacctgcattcatatagtcacatataatattagtttaa |
150 |
Q |
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| T |
24679149 |
tcatctaatgttgaccataatgtgtacatagttgtcaatttagaagttccttttgtttccatttcctgcattcatatagtcacatataatattaatttaa |
24679050 |
T |
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| Q |
151 |
catcaagcatgccatatcgaaccattatataaagtcatttgaaccaaactga |
202 |
Q |
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| T |
24679049 |
catcaagcatgccgtaccgaaccattatataaagtcatctgaaccaaactga |
24678998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 24679314 - 24679265
Alignment:
| Q |
2 |
cgaaaataagaaacattttctatagagttataaaatgacatgaacattct |
51 |
Q |
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| T |
24679314 |
cgaaaataagaaacattttctatatagttataaaattacatgaacattct |
24679265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 2978 - 3128
Alignment:
| Q |
52 |
catctaatgttgaccataatgcgtacatagttgtcaatttagaagttccttttgtttccattacctgcattcatatagtcacatataatattagtttaac |
151 |
Q |
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| T |
2978 |
catctaatgttgaccataatgtgtacatagttgtcaatttagaagttccttttgtttgcattacctgcattcatatagtcacatataatattaattttac |
3077 |
T |
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| Q |
152 |
atcaagcatgccatatcgaaccattatataaagtcatttgaaccaaactga |
202 |
Q |
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| T |
3078 |
accaaacatgccgtaccgaacaattatataaagtcatctgaaccaaactga |
3128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2811 - 2863
Alignment:
| Q |
1 |
ccgaaaataagaaacattttctatagagttataaaatgacatgaacattctca |
53 |
Q |
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| T |
2811 |
ccgaaaataagaaacattttctatagagttataaaatgacatgaacattctca |
2863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 25341478 - 25341590
Alignment:
| Q |
51 |
tcatctaatgttgaccataatgcgtacatagttgtcaatttagaagttccttttgtttccattacctgcattcatatagtcacatataatattagtttaa |
150 |
Q |
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| T |
25341478 |
tcatctaattctgaccataatgtgttcaaagttgtcaatttagaagttcattttgcttccatttcctgcattcatatagtcacatataatattaatttaa |
25341577 |
T |
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| Q |
151 |
catcaagcatgcc |
163 |
Q |
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|| |||||||||| |
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| T |
25341578 |
caccaagcatgcc |
25341590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 25345961 - 25346073
Alignment:
| Q |
51 |
tcatctaatgttgaccataatgcgtacatagttgtcaatttagaagttccttttgtttccattacctgcattcatatagtcacatataatattagtttaa |
150 |
Q |
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||||||||| ||||||||||| || || |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
25345961 |
tcatctaattctgaccataatgtgttcaaagttgtcaatttagaagttcattttgcttccatttcctgcattcatatagtcacatataatattaatttaa |
25346060 |
T |
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| Q |
151 |
catcaagcatgcc |
163 |
Q |
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|| |||||||||| |
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| T |
25346061 |
caccaagcatgcc |
25346073 |
T |
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