View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18494_high_7 (Length: 487)
Name: NF18494_high_7
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 39347372 - 39346909
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39347372 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
39347273 |
T |
|
| Q |
110 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39347272 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
39347173 |
T |
|
| Q |
210 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39347172 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcaatacatactaaataattaaactttaacacact |
39347073 |
T |
|
| Q |
310 |
tagaaagaaagagtgagaatggcttttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnn |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39347072 |
tagaaagaaagagtgagaatggcttttataaaccagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagaaaaa |
39346973 |
T |
|
| Q |
410 |
nnnnnntccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39346972 |
aaaaaatccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
39346909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 4013215 - 4012753
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4013215 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
4013116 |
T |
|
| Q |
110 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4013115 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
4013016 |
T |
|
| Q |
210 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4013015 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcaatacatactaaataattaaactttaacacact |
4012916 |
T |
|
| Q |
310 |
tagaaagaaagagtgagaatggcttttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnn |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4012915 |
tagaaagaaagagtgagaatggcttttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagag-aaaa |
4012817 |
T |
|
| Q |
410 |
nnnnnntccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4012816 |
aaaaaatccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
4012753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 40 - 450
Target Start/End: Complemental strand, 25880049 - 25879644
Alignment:
| Q |
40 |
ataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtct |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25880049 |
ataagttcttcaaaaatcatgactactactcacattcacttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaatatgtct |
25879950 |
T |
|
| Q |
140 |
taaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaat |
239 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25879949 |
taaaatgggcacatgaaaagggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagttcaat |
25879850 |
T |
|
| Q |
240 |
gaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggcttttata |
339 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25879849 |
gaaaattaaagtttcatctgaggagaaacagaaaattaatacatactaaataagtaaactttaacacacttagaaagaaacggtgagaatggcttttata |
25879750 |
T |
|
| Q |
340 |
aatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaattttgat |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25879749 |
aatcagacataagtttataagtgaatgaaagaccatggtcacaccatat----atccgtttagag-aaaaaaaaaatccttcagccatcacaattttgat |
25879655 |
T |
|
| Q |
440 |
tgaaactacat |
450 |
Q |
| |
|
||||||||||| |
|
|
| T |
25879654 |
tgaaactacat |
25879644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 25880105 - 25880077
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25880105 |
catcatcaaatggagagaacactaaatgt |
25880077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 2275881 - 2275419
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275881 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
2275782 |
T |
|
| Q |
110 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2275781 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
2275682 |
T |
|
| Q |
210 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2275681 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcaatacatactaaataattaaactttaacacact |
2275582 |
T |
|
| Q |
310 |
tagaaagaaagagtgagaatggcttttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnn |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275581 |
tagaaagaaagagtgagaatggcttttataaaccagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagag-aaaa |
2275483 |
T |
|
| Q |
410 |
nnnnnntccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2275482 |
aaaaaatccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
2275419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 35348804 - 35348361
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348804 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
35348705 |
T |
|
| Q |
110 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35348704 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
35348605 |
T |
|
| Q |
210 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
35348604 |
tattcatcaattcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcaatacatacaaaataattaaactttaacacact |
35348505 |
T |
|
| Q |
310 |
tagaaagaaagagtgagaatggcttttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnn |
409 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348504 |
tagaaagaaagagtgagaatggctttt-------------------ataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagag-agaa |
35348425 |
T |
|
| Q |
410 |
nnnnnntccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348424 |
aaaaaatccttcagccatcacaattttgattgaaactacatacctagatagtgccggcacaacc |
35348361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 36 - 473
Target Start/End: Original strand, 10789346 - 10789779
Alignment:
| Q |
36 |
tgtcataagttcttcaaaaatcatgactactacccacaatcactttt-ttctagagaaatacttagtcaaccctcctctttcataagttcataggaaata |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10789346 |
tgtcataagttcttcaaaaatcatgactactacccacattcactttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaata |
10789445 |
T |
|
| Q |
135 |
tgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagt |
234 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10789446 |
tgtcttaaaatgggcacatgaaaaaggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagt |
10789545 |
T |
|
| Q |
235 |
tcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacacttagaaagaaagagtgagaatggctt |
334 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10789546 |
tcaatgaaaattaaagtttcatctgaggagaaacagaaaatcaatacatactaaataagtaaactttaacacacttagaaagaaacagtgagaatggctt |
10789645 |
T |
|
| Q |
335 |
ttataaatcagacataagtttataagtgaatgaaagaccatggtcaaaccatatatccatccgtttagagnnnnnnnnnnntccttcagccatcacaatt |
434 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
10789646 |
ttataaatcagacataagtttataactgaatgaaagaccatggtcacaccatat----atccgtttagagagaaaaaaaaatccttcagccatcacaatt |
10789741 |
T |
|
| Q |
435 |
ttgattgaaactacatacctagatagtgccggcacaacc |
473 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
10789742 |
ttgattgaaactacat-tatagatagtgccggcataacc |
10789779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 8749646 - 8749737
Alignment:
| Q |
220 |
ttcattactgcaagttcaatgaaaatttaagtttcatctgaggagaaacagaaaatcagtacatactaaataattaaactttaacacactta |
311 |
Q |
| |
|
||||||| ||||| ||| ||||||||| ||| |||| ||||||||||||| |||| |||| || | ||||| || |||||||||||||||| |
|
|
| T |
8749646 |
ttcattagtgcaacttcgatgaaaattaaaggttcacctgaggagaaacataaaaacagttcacataaaatagtttaactttaacacactta |
8749737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 10789293 - 10789321
Alignment:
| Q |
10 |
catcatcaaatggagagaacactaaatgt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10789293 |
catcatcaaatggagagaacactaaatgt |
10789321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University