View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18494_low_10 (Length: 430)

Name: NF18494_low_10
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18494_low_10
NF18494_low_10
[»] chr7 (16 HSPs)
chr7 (164-412)||(47332714-47332978)
chr7 (54-163)||(38477869-38477978)
chr7 (57-163)||(36785988-36786094)
chr7 (57-165)||(41342703-41342810)
chr7 (54-115)||(33482208-33482269)
chr7 (57-123)||(27230490-27230556)
chr7 (117-169)||(31320374-31320426)
chr7 (42-105)||(22316570-22316633)
chr7 (115-163)||(21869400-21869448)
chr7 (117-165)||(35791644-35791692)
chr7 (126-165)||(29993485-29993524)
chr7 (57-123)||(38916414-38916480)
chr7 (126-167)||(24438626-24438667)
chr7 (57-122)||(28750948-28751013)
chr7 (57-94)||(34567697-34567734)
chr7 (67-147)||(38478434-38478514)
[»] chr3 (9 HSPs)
chr3 (48-162)||(3735190-3735304)
chr3 (57-168)||(18715137-18715248)
chr3 (57-139)||(30385771-30385853)
chr3 (57-157)||(53153877-53153977)
chr3 (126-169)||(46352783-46352826)
chr3 (117-163)||(23516581-23516627)
chr3 (1-50)||(37745360-37745409)
chr3 (126-163)||(43269739-43269776)
chr3 (57-97)||(46458458-46458498)
[»] chr2 (12 HSPs)
chr2 (48-163)||(26557121-26557236)
chr2 (57-164)||(32479403-32479510)
chr2 (57-157)||(25571712-25571812)
chr2 (57-163)||(8373234-8373340)
chr2 (57-104)||(10819392-10819439)
chr2 (57-104)||(19037224-19037271)
chr2 (57-104)||(26154139-26154186)
chr2 (113-163)||(28277511-28277561)
chr2 (57-163)||(29292995-29293101)
chr2 (1-49)||(26557032-26557080)
chr2 (114-162)||(30674068-30674116)
chr2 (117-157)||(36600089-36600129)
[»] chr8 (13 HSPs)
chr8 (48-163)||(45184974-45185089)
chr8 (48-169)||(16063083-16063204)
chr8 (57-163)||(33201693-33201799)
chr8 (111-168)||(15451203-15451260)
chr8 (57-136)||(3988713-3988792)
chr8 (57-157)||(26744425-26744524)
chr8 (83-164)||(43723732-43723814)
chr8 (126-166)||(9537821-9537861)
chr8 (57-105)||(43459864-43459912)
chr8 (57-104)||(23234777-23234824)
chr8 (57-122)||(308333-308398)
chr8 (126-171)||(34228831-34228876)
chr8 (126-154)||(7261961-7261989)
[»] chr4 (13 HSPs)
chr4 (48-163)||(53297743-53297858)
chr4 (57-169)||(10425997-10426109)
chr4 (57-157)||(23643397-23643496)
chr4 (57-136)||(12639194-12639273)
chr4 (57-103)||(49489454-49489500)
chr4 (127-165)||(54897458-54897496)
chr4 (57-165)||(20644662-20644769)
chr4 (116-163)||(28104694-28104740)
chr4 (57-123)||(43012782-43012848)
chr4 (114-164)||(43013198-43013248)
chr4 (57-122)||(12639749-12639814)
chr4 (126-167)||(39877243-39877284)
chr4 (114-166)||(27105522-27105574)
[»] chr5 (9 HSPs)
chr5 (83-163)||(8107795-8107874)
chr5 (68-169)||(7741498-7741599)
chr5 (57-142)||(27128814-27128899)
chr5 (117-164)||(1919613-1919660)
chr5 (57-123)||(20983571-20983637)
chr5 (57-123)||(25672630-25672696)
chr5 (115-169)||(25980929-25980983)
chr5 (57-135)||(41353550-41353628)
chr5 (73-169)||(3340317-3340413)
[»] chr1 (6 HSPs)
chr1 (57-163)||(45225195-45225303)
chr1 (79-163)||(8123785-8123870)
chr1 (115-163)||(12377213-12377261)
chr1 (126-163)||(12072062-12072099)
chr1 (73-157)||(12326107-12326191)
chr1 (57-97)||(29441595-29441635)
[»] chr6 (11 HSPs)
chr6 (57-166)||(4296591-4296700)
chr6 (57-163)||(1603997-1604103)
chr6 (57-157)||(12307323-12307423)
chr6 (57-104)||(28113997-28114044)
chr6 (114-163)||(8701331-8701380)
chr6 (57-136)||(7727403-7727482)
chr6 (114-165)||(12306945-12306996)
chr6 (57-122)||(8701263-8701328)
chr6 (126-167)||(12145113-12145154)
chr6 (114-166)||(2484250-2484302)
chr6 (117-165)||(20969468-20969515)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 164 - 412
Target Start/End: Original strand, 47332714 - 47332978
Alignment:
Q  164 ataaaagaatcaattacattaagggagacataa----------gttaatgagaagataaacaaactattgtaaccaattaat------attgtgcacatc 247  Q
    |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  47332714 ataaaagaatcaattacattaagggagacataaaatttatacagttaatgagaagataaacaaactattgtaaccaattaatgtaactattgtgcacatc 47332813  T
Q  248 ataacagattttcataacgattaatcgatccaagtagtgccaattgggttttctacatggattcctgcaggcatagggttgtttatgttgatgttcactt 347  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47332814 atatcagattttcataacgattaatcgatccaagtagtgccaattgggttttctacatggattcctgcaggcatagggttgtttatgttgatgttcactt 47332913  T
Q  348 ttatcgtgattatcatacttctacctgggtaactcataaaattcagctgcttcaactgttcccat 412  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47332914 ttatcgtgattatcatactcctacctgggtaactcataaaattcagctgcttcaactgttcccat 47332978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 38477978 - 38477869
Alignment:
Q  54 ttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggtt 153  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  38477978 ttgttttaattaattgatttatttatcactttaattaaggtaaattaagtgagaatagtttatttattgtttcttaaccagtgtcccggagacaccggtt 38477879  T
Q  154 agcagcaccc 163  Q
    ||||||||||    
T  38477878 agcagcaccc 38477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 36785988 - 36786094
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||  |  |||| |||||||| ||||||||||||| ||||| |||||||||||||    
T  36785988 ttttaattaattgacttatttatcactttaattaaactaaaataaatgtaatcaattcatttattgcttcttaaccagtgccccgggggcaccggttagc 36786087  T
Q  157 agcaccc 163  Q
    |||||||    
T  36786088 agcaccc 36786094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 41342703 - 41342810
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||  |||| ||| |||||||  ||||||||||||| ||  || |||||||||||    
T  41342703 ttttaattaattgacttatttatcactttaattaagataaattaaatg-taatatattcatttattacttcttaaccagtgcccatga-gcaccggttag 41342800  T
Q  156 cagcacccat 165  Q
    ||||||||||    
T  41342801 cagcacccat 41342810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 33482269 - 33482208
Alignment:
Q  54 ttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataattta 115  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||| ||||||| |||||    
T  33482269 ttgttttaattaattaacttatttatcactttaattaagataaattaagtgagaatcattta 33482208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 27230556 - 27230490
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgt 123  Q
    ||||||||| |||| ||||||  ||||||||||||||||||| |||||||| | |||||||||||||    
T  27230556 ttttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgt 27230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 31320374 - 31320426
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccataaaa 169  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||    
T  31320374 ttattgttccttaaccagtgccccgggggcaccggttagcaacacccataaaa 31320426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 22316633 - 22316570
Alignment:
Q  42 tatatatagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatga 105  Q
    |||||||| || || ||||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  22316633 tatatatattttttcttttaattaattgtcttatttatcactttaattaaagtaaaataaatga 22316570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 21869448 - 21869400
Alignment:
Q  115 atttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    |||||||| | ||||||||||| |||||||||||| |||||||||||||    
T  21869448 atttattgctccttaaccagtgacccggaggcaccagttagcagcaccc 21869400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 35791644 - 35791692
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccat 165  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||    
T  35791644 ttattgttccttaaccagtgccccgggggcaccggttagcaacacccat 35791692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 29993524 - 29993485
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccat 165  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  29993524 cttaaccagtgtcccggaggcatcggttagcaggacccat 29993485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 38916414 - 38916480
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgt 123  Q
    ||||||||| |||| ||||||  ||||||||||||||||||| || |||||   |||||||||||||    
T  38916414 ttttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgt 38916480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 24438626 - 24438667
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccataa 167  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  24438626 cttaaccagtgccccgggggcaccggttagcaggacccataa 24438667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 28750948 - 28751013
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattg 122  Q
    ||||||||| |||| ||||||  |||||||||||||||||| ||| |||||   ||||||||||||    
T  28750948 ttttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattg 28751013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 34567697 - 34567734
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggt 94  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34567697 ttttaattagttgacttatttatcactttaattaaggt 34567734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 38478434 - 38478514
Alignment:
Q  67 ttgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| ||||| |||  |||||| |||||||| || ||||| | |||||||||||  ||||||||||||| ||||| ||||    
T  38478434 ttgacttatttctcaaattaattgaggtaaatcaattgagattcatttatttattacttcttaaccagtgccccgggggca 38478514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 3735304 - 3735190
Alignment:
Q  48 tagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  3735304 tagttcttgttttaattaattgacttatttatcactttaattaagataaattaagtgagaatagtttatttattgtttcttaaccagtgtcccggaggca 3735205  T
Q  148 ccggttagcagcacc 162  Q
    |||||||||||||||    
T  3735204 ccggttagcagcacc 3735190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 18715248 - 18715137
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  18715248 ttttaattaattgacttatttatcactttaattaaggtaaattaaatgt-aatatatttatttattgtttcttaaccagtgccccggaggcaccggttag 18715150  T
Q  156 cagcacccataaa 168  Q
    |||||||||||||    
T  18715149 cagcacccataaa 18715137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 30385771 - 30385853
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcc 139  Q
    ||||||||| |||| ||||||  ||||||||||||||||||| ||||||||   |||||||||||||| |||| |||||||||    
T  30385771 ttttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattgttccttatccagtgtcc 30385853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 53153877 - 53153977
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||| |||| ||||||  ||||||||||||||||||| || ||||| | || |||||||| || |||| |||||  ||| | |||||||||||||    
T  53153877 ttttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctatttattattccttatccagtaccccaggggcaccggttagc 53153976  T
Q  157 a 157  Q
    |    
T  53153977 a 53153977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 46352783 - 46352826
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccataaaa 169  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  46352783 cttaacccgtgccccggaggcaccggttagcaggacccataaaa 46352826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 23516581 - 23516627
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  23516581 ttattgttccttaaccagtgccccgggggcaccggttagcaacaccc 23516627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37745409 - 37745360
Alignment:
Q  1 ttcaaatcataaggaaaggaaagaaaagcacttgcgtgcgctatatatag 50  Q
    |||||||||| ||||||||||||||| ||||  ||||| |||||||||||    
T  37745409 ttcaaatcatgaggaaaggaaagaaatgcacgcgcgtgtgctatatatag 37745360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 43269776 - 43269739
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  43269776 cttaaccagtgccccggaggcaccggttagcaggaccc 43269739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 46458498 - 46458458
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaa 97  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  46458498 ttttaattaattgtcttatttatcactttaattaaagtaaa 46458458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 26557121 - 26557236
Alignment:
Q  48 tagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  26557121 tagttcttgttttaattaattgatttatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaacccgtgttccgggggca 26557220  T
Q  148 ccggttagcagcaccc 163  Q
    ||||||||||||||||    
T  26557221 ccggttagcagcaccc 26557236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 32479510 - 32479403
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||||||||| ||||||||||| |||||||| |||| ||||||  |   ||| |||||||| ||||||||||||| || ||||||||||||||||    
T  32479510 ttttaattaattgacttatttatcactctaattaagataaaataaatgtaatctattcatttattgcttcttaaccagtgccctggaggcaccggttagc 32479411  T
Q  157 agcaccca 164  Q
    ||||||||    
T  32479410 agcaccca 32479403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 25571712 - 25571812
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||  |||| ||| |||||||| |||||||||||||  ||||  |||||||||||    
T  25571712 ttttaattaattgacttatttatcactttaattaaggtaaaataaatg-taatatattcatttattgcttcttaaccagtgctccgggagcaccggttag 25571810  T
Q  156 ca 157  Q
    ||    
T  25571811 ca 25571812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 8373234 - 8373340
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaat-aatttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| | |||  ||| |||||||  ||||||||||||| |||||  |||||||||||    
T  8373234 ttttaattaattgacttatttatcactttaattaaggtaaaataaat-ataatctattcatttattacttcttaaccagtgccccgggagcaccggttag 8373332  T
Q  156 cagcaccc 163  Q
    ||| ||||    
T  8373333 cagtaccc 8373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 10819392 - 10819439
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatg 104  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  10819392 ttttaattaattgacatgtttatcactttaattaaggtaaaataaatg 10819439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 19037271 - 19037224
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatg 104  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  19037271 ttttaattaattgacttatttatcactttaattaaggtaaaataaatg 19037224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 26154186 - 26154139
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatg 104  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  26154186 ttttaattaattgacttatttatcactttaattaaagtaaattaaatg 26154139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 28277561 - 28277511
Alignment:
Q  113 ttatttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    |||||||||||| ||||||||||| ||||| |||||| ||||||| |||||    
T  28277561 ttatttattgttccttaaccagtgccccgggggcaccagttagcaacaccc 28277511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 29292995 - 29293101
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||| ||| | |||||||||||||||||||  |||| ||||| | | |  || |||||||  | ||||||| ||| ||||| |||||||||||||    
T  29292995 ttttaattagttgccttatttatcactttaattaaaataaaataaataaaatttgttcatttattactccttaaccggtgccccgggggcaccggttagc 29293094  T
Q  157 agcaccc 163  Q
    | |||||    
T  29293095 aacaccc 29293101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26557032 - 26557080
Alignment:
Q  1 ttcaaatcataaggaaaggaaagaaaagcacttgcgtgcgctatatata 49  Q
    |||||||||| |||||||||||||||||||   ||||| ||||||||||    
T  26557032 ttcaaatcatgaggaaaggaaagaaaagcatgcgcgtgtgctatatata 26557080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 30674116 - 30674068
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacc 162  Q
    |||||||| ||| ||| |||||||||||| |||||||||||||| ||||    
T  30674116 tatttattattttttatccagtgtcccgggggcaccggttagcaacacc 30674068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 36600089 - 36600129
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagca 157  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  36600089 ttattgttccttaaccagtgcaccggaggcaccggttagca 36600129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 45184974 - 45185089
Alignment:
Q  48 tagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| |||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  45184974 tagttcttgttttaattaattgacttagttattactttaattaaggtaaattaagtgagaataatttatttattgtttcttaaccagtgccccgggggca 45185073  T
Q  148 ccggttagcagcaccc 163  Q
    ||||||||||||||||    
T  45185074 ccggttagcagcaccc 45185089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 16063204 - 16063083
Alignment:
Q  48 tagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||  |||    
T  16063204 tagttcttgttttaattaattgacttgtttatcactttaattaatgtaaattaagtgagaataatttatttattgtttcttaacccgtgccccgggagca 16063105  T
Q  148 ccggttagcagcacccataaaa 169  Q
    |||||||||||||||| |||||    
T  16063104 ccggttagcagcacccttaaaa 16063083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 33201799 - 33201693
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||  |||| ||| |||||||  |||||||||||||  |||| ||||||||||||    
T  33201799 ttttaattaattgacttatttgtcactttaattaaggtaaaataaatg-taatatattcatttattacttcttaaccagtgctccgggggcaccggttag 33201701  T
Q  156 cagcaccc 163  Q
    | ||||||    
T  33201700 cggcaccc 33201693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 15451203 - 15451260
Alignment:
Q  111 atttatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccataaa 168  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  15451203 atttatttattgctccttaaccagtgccccggaggcaccggttagcagcacccataaa 15451260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 3988713 - 3988792
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtg 136  Q
    ||||||||||||||| ||||||||||||||||||||||| | ||||||  |||| ||| ||||||||||||||||||||||    
T  3988713 ttttaattaattgacttatttatcactttaattaaggtataataaatg-taatatattcatttattgtttcttaaccagtg 3988792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 26744524 - 26744425
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||| ||||| ||||||||||||||||||| |||||  |||| | ||||  ||||| |||| | |||||||||||| ||| |||||||| |||||    
T  26744524 ttttaattagttgacttatttatcactttaattaaagtaaaagaaat-aaaatatattattgattgctccttaaccagtgttccgaaggcaccgattagc 26744426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 43723814 - 43723732
Alignment:
Q  83 tttaattaaggtaaattaaatgagaataatttattt-attgtttcttaaccagtgtcccggaggcaccggttagcagcaccca 164  Q
    ||||||| | ||||||||||||||| | ||  |||| |||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  43723814 tttaattgaagtaaattaaatgagactcatcaattttattgttgcttaacccgtgccccgggggcaccggttagcagcaccca 43723732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 9537861 - 9537821
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccata 166  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  9537861 cttaaccagtgtcccggagacaccggttagcaggacccata 9537821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 43459912 - 43459864
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatga 105  Q
    ||||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  43459912 ttttaattaattgccttatttatcactttaattaaagtaaaataaatga 43459864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 23234777 - 23234824
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatg 104  Q
    |||||||||||||||  |||||||||||||||||| ||||| ||||||    
T  23234777 ttttaattaattgactaatttatcactttaattaaagtaaaataaatg 23234824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 308398 - 308333
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattg 122  Q
    ||||||||| |||| ||||||  |||||||||||||||||| ||| |||||   ||||||||||||    
T  308398 ttttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattg 308333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 34228831 - 34228876
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccataaaaga 171  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||||||    
T  34228831 cttaaccagtgccccgggggcaccggttagcaggacccaaaaaaga 34228876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 7261989 - 7261961
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggtta 154  Q
    |||||||||||||||||||||||||||||    
T  7261989 cttaaccagtgtcccggaggcaccggtta 7261961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 53297858 - 53297743
Alignment:
Q  48 tagttgttgttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggca 147  Q
    ||||| || ||||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||   |||    
T  53297858 tagttcttattttaattaattgatttatttatcactttaattaaggtaaattaagtgagaatcatttatttattgttcgttaaccagtgtcccgagagca 53297759  T
Q  148 ccggttagcagcaccc 163  Q
    | ||||||||||||||    
T  53297758 ctggttagcagcaccc 53297743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 10425997 - 10426109
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||  |   ||| |||||||  ||||||||||||| ||||| |||||||||||||    
T  10425997 ttttaattaattgacttatttatgactttaattaaggtaaaataaatgtaatctattcatttattacttcttaaccagtgccccgggggcaccggttagc 10426096  T
Q  157 agcacccataaaa 169  Q
    |||||||||||||    
T  10426097 agcacccataaaa 10426109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 23643496 - 23643397
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||| |||| ||||||  ||||||||||||| ||||| || |||||  ||||||||||||||| |||| || ||| ||||| |||| ||||||||    
T  23643496 ttttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattgttccttatccggtgccccgg-ggcatcggttagc 23643398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 12639273 - 12639194
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtg 136  Q
    ||||||||| |||||||||||  ||| |||||| ||||||||||| |||||   |||||||||||||| |||| ||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattgttccttatccagtg 12639194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 49489500 - 49489454
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaat 103  Q
    ||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  49489500 ttttaattaattgacttatttatcactttaaataaggtaaaataaat 49489454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 54897458 - 54897496
Alignment:
Q  127 ttaaccagtgtcccggaggcaccggttagcagcacccat 165  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  54897458 ttaaccagtgtcccggaggcaccggttagcaggacccat 54897496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 20644769 - 20644662
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||||||||  ||||| ||| ||||||| |||||||  |||| |   | |||||||||||||| |||||||||| | |||| || ||||||||||    
T  20644769 ttttaattaattgatttatttttcattttaattgaggtaaaccaaattaagttcatttatttattgttccttaaccagtattccgg-ggtaccggttagc 20644671  T
Q  157 agcacccat 165  Q
    ||| |||||    
T  20644670 agcgcccat 20644662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 28104694 - 28104740
Alignment:
Q  116 tttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  28104694 tttattgtttcttaacccgtgccccgg-ggcaccggttagcagcaccc 28104740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 43012848 - 43012782
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgt 123  Q
    ||||||||| |||| ||||||  ||||||||||||||||||  ||||||||   |||||||||||||    
T  43012848 ttttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgt 43012782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 43013198 - 43013248
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccca 164  Q
    |||||||| ||||||| |||||| ||||| ||||| |||||||||||||||    
T  43013198 tatttattatttcttatccagtgccccgggggcactggttagcagcaccca 43013248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 12639749 - 12639814
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattg 122  Q
    ||||||||| |||||||||||  |||||||||| |||| |||||| |||||   ||||||||||||    
T  12639749 ttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattg 12639814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 39877284 - 39877243
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccataa 167  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  39877284 cttaaccagtgccccggaggcacgggttagcaggacccataa 39877243  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 27105574 - 27105522
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccata 166  Q
    |||||| |||| |||| |||||| ||||| ||||| |||||||||||||||||    
T  27105574 tatttaatgttccttatccagtgccccgggggcactggttagcagcacccata 27105522  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 8107795 - 8107874
Alignment:
Q  83 tttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  8107795 tttaattaaggtaaattaagtgagaataatttatttattgtttcttaaccagtgccccgga-acaccggttagcagcaccc 8107874  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 7741599 - 7741498
Alignment:
Q  68 tgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccataa 167  Q
    |||| ||||||||||||||||||||||||| ||||||  |    ||  ||||||| ||||||||||||| ||| |||||||||||||||||||||| |||    
T  7741599 tgacttatttatcactttaattaaggtaaaataaatgtaatctcttcttttattgcttcttaaccagtgccccagaggcaccggttagcagcacccttaa 7741500  T
Q  168 aa 169  Q
    ||    
T  7741499 aa 7741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 27128899 - 27128814
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccgg 142  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||  |||| ||| |||||||| ||||||||||||| |||||    
T  27128899 ttttaattaattaacttatttatcactttaattaaggtaaaataaatg-taatatattcatttattgcttcttaaccagtgccccgg 27128814  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 1919613 - 1919660
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccca 164  Q
    |||||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  1919613 ttattgttccttaaccagtgccccgggggcaccggttagcaacaccca 1919660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 20983637 - 20983571
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgt 123  Q
    ||||||||| |||| ||||||  ||||||||||||||||||  ||||||||   |||||||||||||    
T  20983637 ttttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgt 20983571  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 25672630 - 25672696
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgt 123  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||  || ||||| | |||||||||||||    
T  25672630 ttttaattagttgacttatatatcactttaatttaggtaaaccaattgagattcatttatttattgt 25672696  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 25980929 - 25980983
Alignment:
Q  115 atttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccataaaa 169  Q
    |||||||| |||||||||||||| ||||  ||| ||||||||| |||||||||||    
T  25980929 atttattgcttcttaaccagtgttccgggagcatcggttagcaacacccataaaa 25980983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 41353550 - 41353628
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagt 135  Q
    ||||||||||||| | |||||||||||||||||||  |||| ||||||| | |  || ||||| || ||||||||||||    
T  41353550 ttttaattaattgtcttatttatcactttaattaaaataaaataaatgaaatttgttcatttaatgcttcttaaccagt 41353628  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 3340317 - 3340413
Alignment:
Q  73 tatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccataaaa 169  Q
    ||||||||| ||||||||| ||||| ||| || ||||  ||| |||||||| |||||||||| |||| | | | |||||||||||| |||||||||||    
T  3340317 tatttatcattttaattaaagtaaaataagtg-gaatctattaatttattgcttcttaaccaatgtcacagggccaccggttagcaacacccataaaa 3340413  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 45225303 - 45225195
Alignment:
Q  57 ttttaattaattgacatatttat--cactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggtta 154  Q
    ||||||||||||||| |||||||  || ||||||||||||||| |||||  ||   ||| ||||||||||||||||||||||||||| ||||||||||||    
T  45225303 ttttaattaattgacttatttatatcattttaattaaggtaaaataaatatgatctattcatttattgtttcttaaccagtgtcccgaaggcaccggtta 45225204  T
Q  155 gcagcaccc 163  Q
    |||||||||    
T  45225203 gcagcaccc 45225195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 8123785 - 8123870
Alignment:
Q  79 tcactttaattaaggtaaattaaatgagaataatttattt-attgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    ||||||||||| | ||||||||||||||| | ||| |||| |||||| ||||||  |||  |||||||||||||||||||||||||    
T  8123785 tcactttaattgaagtaaattaaatgagactcattaattttattgttccttaacaggtgctccggaggcaccggttagcagcaccc 8123870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 12377261 - 12377213
Alignment:
Q  115 atttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    |||||||| | |||||||||||||||||||||||||||||||| |||||    
T  12377261 atttattgctccttaaccagtgtcccggaggcaccggttagcaacaccc 12377213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 12072099 - 12072062
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  12072099 cttaaccagtgccccgggggcaccggttagcagcaccc 12072062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 12326191 - 12326107
Alignment:
Q  73 tatttatcactttaattaaggtaaattaaatgagaataattt-atttattgtttcttaaccagtgtcccggaggcaccggttagca 157  Q
    ||||||||||||||||||| ||||| ||| | ||||||  || |||||||| | |||||  ||||| |||||||||||||||||||    
T  12326191 tatttatcactttaattaaagtaaaataagt-agaatatgttcatttattgctccttaattagtgttccggaggcaccggttagca 12326107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 29441595 - 29441635
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaa 97  Q
    ||||||||| ||||| ||||||||| |||||||||||||||    
T  29441595 ttttaattagttgacttatttatcattttaattaaggtaaa 29441635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 4296700 - 4296591
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaata-atttatttattgtttcttaaccagtgtcccggaggcaccggttag 155  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||| | |||  ||| |||||||| || |||||||||||| ||||||||||||||||    
T  4296700 ttttaattagttgacttatttatcactttaattaaggtaaaataaat-ataatctattcatttattgctttttaaccagtgtcacggaggcaccggttag 4296602  T
Q  156 cagcacccata 166  Q
    | |||||||||    
T  4296601 cggcacccata 4296591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 1604103 - 1603997
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||| |  |   ||| |||||||| ||||||||||||| ||||| |||||||||||||    
T  1604103 ttttaattaattgacttatttatcactttaattaatgtaaaataaacgtaatctattcatttattgcttcttaaccagtgccccgggggcaccggttagc 1604004  T
Q  157 agcaccc 163  Q
    | |||||    
T  1604003 aacaccc 1603997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 12307323 - 12307423
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtgtcccggaggcaccggttagc 156  Q
    ||||||||| |||| ||||||  ||||||||||||| ||||| || |||||   |||||||||||||| |||| ||| || ||||| |||||||||||||    
T  12307323 ttttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattgttccttatccaatggcccgggggcaccggttagc 12307422  T
Q  157 a 157  Q
    |    
T  12307423 a 12307423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 28113997 - 28114044
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatg 104  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  28113997 ttttaattaattgacttatttatcactttaattaaggtaaaataaatg 28114044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 8701331 - 8701380
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcaccc 163  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  8701331 tatttattatttcttaaccagtgccccgggggcaccggttagcagcaccc 8701380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 7727403 - 7727482
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattgtttcttaaccagtg 136  Q
    ||||||||| |||| ||||||  ||||||||||||||||||  || |||||  ||||||||||||||| |||| ||||||    
T  7727403 ttttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattgttccttatccagtg 7727482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 12306996 - 12306945
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccat 165  Q
    |||||||| ||||||| |||||| ||||| |||||||||||| |||||||||    
T  12306996 tatttattatttcttatccagtgccccgggggcaccggttagtagcacccat 12306945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 8701263 - 8701328
Alignment:
Q  57 ttttaattaattgacatatttatcactttaattaaggtaaattaaatgagaataatttatttattg 122  Q
    ||||||||| ||||| ||| ||||||||||||| | |||||| || ||||| | ||||||||||||    
T  8701263 ttttaattagttgacttatatatcactttaatttaagtaaatcaattgagattcatttatttattg 8701328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 12145154 - 12145113
Alignment:
Q  126 cttaaccagtgtcccggaggcaccggttagcagcacccataa 167  Q
    |||||||||||  |||||||||||||||||||| ||||||||    
T  12145154 cttaaccagtgctccggaggcaccggttagcaggacccataa 12145113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 2484250 - 2484302
Alignment:
Q  114 tatttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccata 166  Q
    |||||| |||| |||| |||||| ||||| ||||| |||||||||||||||||    
T  2484250 tatttaatgttccttatccagtgccccgggggcactggttagcagcacccata 2484302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 20969468 - 20969515
Alignment:
Q  117 ttattgtttcttaaccagtgtcccggaggcaccggttagcagcacccat 165  Q
    |||||||| |||||||||||| |||| |||||||||||||| |||||||    
T  20969468 ttattgttccttaaccagtgt-ccgggggcaccggttagcaacacccat 20969515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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