View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_low_20 (Length: 295)
Name: NF18494_low_20
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_low_20 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 7086 - 7352
Alignment:
| Q |
12 |
agagagaacacgacatatagcaaaataggatgcaccacaataaaacatcagtaagaaaataaatacaaatatctattagagagaagccatataattcttc |
111 |
Q |
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| T |
7086 |
agagagaacacgacatatagcaaaataggatgcactacaataaaacatcagtaagaaaataaatacaaatatctattagagagaagccatataattcttc |
7185 |
T |
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| Q |
112 |
caaaattcaatctaaagacttcagcataaaaataatagatactttgacatagataacaaactagaaaattcgacacattttaaaacgataaataggaaga |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7186 |
caaaattcaatctaaa-acttcagcataaaaataatagatactttgacatagataacaaactagaaaattcgacacattttaaaacgataaataggaaga |
7284 |
T |
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| Q |
212 |
gcaacaacaacaattatccaccaagggcaacaaatttcgccgcaaaagcaacaattttacataaaaca |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7285 |
gcaacaacaacaattatccaccaagggcaacaaatttcgccgcaaaagcaacaattttacataaaaca |
7352 |
T |
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