View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18494_low_24 (Length: 256)
Name: NF18494_low_24
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 16231165 - 16231395
Alignment:
| Q |
18 |
caatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattccatatatagaaaaataattaatgttcaatcattttgactacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
16231165 |
caatcaacagtaaagaatttaaattaaagattgttaatagcactagtcattccatatatagaaaaataatgaacgttcaatcattttgattacgaagtct |
16231264 |
T |
|
| Q |
118 |
caagtaacagaagacattacatttttgcgatgaagaagcccatcatcaccaataactagacctgatacattcttggatggcgtttcagcggaaactgttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16231265 |
caagtaacagaagacattacatttttgcgatgaagaagcccatcatcgccaataactagacctgatacattcttggatggcgtttcagcagaaactgttt |
16231364 |
T |
|
| Q |
218 |
caaacagtccttcttttcttttctttgatga |
248 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
16231365 |
caaacggtccttcttttcttttctttgatga |
16231395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 34688911 - 34688961
Alignment:
| Q |
21 |
tcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
71 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34688911 |
tcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34688961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 34711323 - 34711373
Alignment:
| Q |
21 |
tcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
71 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34711323 |
tcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34711373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University