View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18494_low_25 (Length: 255)
Name: NF18494_low_25
Description: NF18494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18494_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 9629429 - 9629654
Alignment:
| Q |
15 |
ttcactgattcttgatcttgtctctagatggtaataacctatcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
114 |
Q |
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| T |
9629429 |
ttcattgattcttgatcttgtctctagatggtaataacctttcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
9629528 |
T |
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| Q |
115 |
aactccaatctacataagagaaattttaagaaaatataattaattattaatggaccgaaattgaaaacataaataacattaacacacatgatacatgcat |
214 |
Q |
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| T |
9629529 |
aattccaatctacataagagaaattttaagaaaatataattaattattaatggaccaaaattgaaaacataaataacattaacacacatgatacatgcat |
9629628 |
T |
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| Q |
215 |
actcaatcattagctgctatgaatta |
240 |
Q |
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| T |
9629629 |
actcaatcattagctgctatgaatta |
9629654 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 41258637 - 41258571
Alignment:
| Q |
65 |
aatgtttgctggatttgttgagcaagttcttcagcactgagttggcattcaactccaatctacataa |
131 |
Q |
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| T |
41258637 |
aatgtttgctggatttgttgagcaagttcttcagcactcagttggcattcaattccaatctatataa |
41258571 |
T |
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