View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18495_high_1 (Length: 627)
Name: NF18495_high_1
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 10 - 610
Target Start/End: Complemental strand, 37054520 - 37053924
Alignment:
| Q |
10 |
cagagaggctaaaacagatttcacctatgaaggctttaccattccaaagggatggaaggtaccttcaaattgaattcatcataatatattaagatatata |
109 |
Q |
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| T |
37054520 |
cagagaggctaaaacagatttcacctatgaaggctttaccattccaaagggatggaaggtaccttcaaattgaattcatcataatatattaagatat--- |
37054424 |
T |
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| Q |
110 |
ttgcctatattcattaaaaagtagtaacatgtaacttaaattgttactaaatcatttgtgaacttgtactttaacagatattctgggcatttattggaac |
209 |
Q |
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| T |
37054423 |
-tgcctatattcattaaaaagtagtaacatgtaacttaaattgttactaaatcatttgtgaacttgtactttaacagatattctgggcatttattggaac |
37054325 |
T |
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| Q |
210 |
aaataagaatcccatgtactttgataaacctgaaagttttgatccatctaggtttgaagggaataatgttcctgcaccatacacttatataccctttgga |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37054324 |
aaataagaatcccaagtactttgataaacctgaaagttttgatccatctaggtttgaagggaataatgttcttgcaccatacacttatataccctttgga |
37054225 |
T |
|
| Q |
310 |
tcaggaccaagatcttgtcctggaaaggattacacacggcttgcgattctcactttcattcacaatcttgtaacaaagttcaaatgggaagttatgcttc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054224 |
tcaggaccaagatcttgtcctggaaaggattacacacggcttgcgattctcactttcattcacaatcttgtaacaaagttcaaatgggaagttatgcttc |
37054125 |
T |
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| Q |
410 |
ctgatgaggaagtatctggcgctttgatacctataccaacagagggaattcctatccgtcttcatcacttgttttgatgatcatgaacgtgtgtttggtt |
509 |
Q |
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| T |
37054124 |
ctgatgaggaagtatctggtgctatgatacctataccaacagagggaattcctatccgtcttcatcacttgttttgatgatcatgaacgtgtgtttggtt |
37054025 |
T |
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| Q |
510 |
ctgcggtgagaaaaataaacataatacaagcagaaaaaatgtaaaagtgattgtgtaatgatcataggcgttgattattctctatttattgggatagatt |
609 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054024 |
ctgcggtgaaaaaaataaacataatacaagcagaaaaaatgtaaaagtgattgtgtaatgatcataggcgttgattattctctatttattgggatagatt |
37053925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 13102017 - 13102144
Alignment:
| Q |
351 |
tgcgattctcactttcattcacaatcttgtaacaaagttcaaatgggaagttatgcttcctgatgaggaagtatctggcgctttgatacctataccaaca |
450 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | |
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| T |
13102017 |
tgcgattctcactttcattcacaatcttataacaaagttcaaatgggaagttatgcttcctgatgaggaagtatatggtgctttgatacctataccaata |
13102116 |
T |
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| Q |
451 |
gagggaattcctatccgtcttcatcact |
478 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
13102117 |
tagggaattcctatctgtcttcatcact |
13102144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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