View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18495_high_5 (Length: 410)
Name: NF18495_high_5
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45729432 - 45729173
Alignment:
| Q |
1 |
aggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagatt |
100 |
Q |
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| T |
45729432 |
aggtttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagatt |
45729333 |
T |
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| Q |
101 |
gcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggg |
200 |
Q |
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| T |
45729332 |
gcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggg |
45729233 |
T |
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| Q |
201 |
gagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
260 |
Q |
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| T |
45729232 |
gagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
45729173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 45725242 - 45724991
Alignment:
| Q |
2 |
ggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattg |
101 |
Q |
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| T |
45725242 |
ggtttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattg |
45725143 |
T |
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| Q |
102 |
cgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgagggg |
201 |
Q |
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| T |
45725142 |
tgaggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattagggg |
45725043 |
T |
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| Q |
202 |
agcactgcaggtacctagggataatatgagacaatttactacgagaaggaat |
253 |
Q |
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| T |
45725042 |
accaccggagttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45729107 - 45729038
Alignment:
| Q |
326 |
gtcactactttgatttgtgtaattgctta---ataatgaaacttaatgctcagatatgtaggggctatat |
392 |
Q |
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| T |
45729107 |
gtcactactttgatttgtgtaattgcttattaataatgaaacttaatgctcagatatgtaggggctatat |
45729038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 45724924 - 45724870
Alignment:
| Q |
326 |
gtcactactttgatttgtgtaattgcttaataatgaaacttaatgctcagatatg |
380 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45724924 |
gtcactactttggtttgtgtgattgcttaataatgaaacttaatgctcacatatg |
45724870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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