View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18495_high_6 (Length: 380)
Name: NF18495_high_6
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 8048841 - 8049192
Alignment:
| Q |
18 |
aggagtcgttagggcagagacctattttctttctctttctcttggcaaaaccaacccatggaaaccagaatctcacctgattccgctgcgtcgaatggaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
8048841 |
aggagtcgttagggcaaagacctattttctttctctc------ggcaaaaacaacctatggaaaccaacatctcatccgattccgctgcgtcgaatggaa |
8048934 |
T |
|
| Q |
118 |
ccaatccctcatcggattccgatgcgccaaaaaccaccatggaaaccaacacctcgtcagcattgcagaatttatgtgcgtcgaatggaacacaaaccca |
217 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8048935 |
ccaattactcaccggattccgatgtgccaaaaaccaccatggaaaccaacacctcatcagcattgcagaatttatatgtgtcgaatggaacacaaaccca |
8049034 |
T |
|
| Q |
218 |
ttgtctgacttagacctcaacttgtatagaataaccaaagctttggagtgcttagtttggtacttcaaaccagacaaccaaatcagcgactctttcttca |
317 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
8049035 |
ttgtatgacttagacgtcaacttgtatagaatcaccaaagctttggagtgcttagtttggtacttcgaaccaggcaaccaaatcagcgactttttcttca |
8049134 |
T |
|
| Q |
318 |
atattttgtagaccatgcgtctccctgtttcgagggattgattatgcaattgcctttg |
375 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8049135 |
atattttgtagactatgcgtctccctgtttcgagggattgattatgcaattgcctttg |
8049192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 22991057 - 22990909
Alignment:
| Q |
220 |
gtctgacttagacctcaacttgtatagaataaccaaagctttggagtgc---ttagtttggtacttcaaaccagacaaccaaatcagcgactctttcttc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
22991057 |
gtctgacttagacctcaacttgtatagaatcaccaaaactttggagtgcttattagcttggtacttcgtaccaggcaaccaaatcagc-------tcttc |
22990965 |
T |
|
| Q |
317 |
aatattttgtagaccatgcgtctccctgtttcgagggattgattatgcaattgcct |
372 |
Q |
| |
|
||||||||||||| |||| ||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
22990964 |
gatattttgtagactatgcatctccctatctcgagggattaattatgcaattgcct |
22990909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University