View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18495_low_10 (Length: 242)
Name: NF18495_low_10
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16438716 - 16438478
Alignment:
| Q |
1 |
atgctctgccgattaattacggattcattagctgcaaagtacctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataaga |
100 |
Q |
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| T |
16438716 |
atgctctgccgattaattacggattcattagctgcaaagtacctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataaga |
16438617 |
T |
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| Q |
101 |
aagtatctttccaactggttggagctgaggtgtatagattaaagttaccattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctc |
200 |
Q |
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| T |
16438616 |
aagtatctttccaactggttggagctgaggtgtatagattaaagttactattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctc |
16438517 |
T |
|
| Q |
201 |
actatcttgctcnnnnnnncttaccaccccatctttcat |
239 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
16438516 |
actatcttgctcaaaaaaacttaccaccccatctttcat |
16438478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 16499812 - 16499658
Alignment:
| Q |
61 |
tcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagct---gaggtgtatagattaaagttaccattataca |
157 |
Q |
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| T |
16499812 |
tcttctggtttagggggattaggagacatgttgtagaggaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattataca |
16499713 |
T |
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| Q |
158 |
taaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctc |
212 |
Q |
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| T |
16499712 |
taaaaggtttttgctcacgagtataaaattccttcttgacctcactatcttgctc |
16499658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 16427080 - 16427286
Alignment:
| Q |
36 |
aaagtacctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtat |
135 |
Q |
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| T |
16427080 |
aaagtacctgcatacagctggaaggtcttctggtttggggggattaggagccctgttacaaaggaaggtatctttccaagtaattggatcagatgtatat |
16427179 |
T |
|
| Q |
136 |
aga---ttaaagttaccattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctcnnnnnnncttaccaccccat |
232 |
Q |
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||| ||| | |||| |||||||| ||||||| || ||| ||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| |
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| T |
16427180 |
agaagattataattactattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaacttaccaccccat |
16427279 |
T |
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| Q |
233 |
ctttcat |
239 |
Q |
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||||||| |
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| T |
16427280 |
ctttcat |
16427286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 16442690 - 16442880
Alignment:
| Q |
52 |
gctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgt---atagattaaagttac |
148 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||| || | ||| |||||||||||| | ||||| | || || | |||||||| | |||| |
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| T |
16442690 |
gctggaaggtcttctggtttagggggattaggagccaagttacaaaggaaggtatctttccaagtaattggatcagatgtatgtaatagattataattac |
16442789 |
T |
|
| Q |
149 |
cattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctcnnnnnnncttaccaccccatctttcat |
239 |
Q |
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| T |
16442790 |
tattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaccttaccaccccatctttcat |
16442880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 16417563 - 16417642
Alignment:
| Q |
133 |
tatagattaaagttaccattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctc |
212 |
Q |
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||||||||||| |||| |||||||| ||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
16417563 |
tatagattaaaattactattatacagaaaaggtctatgttcacgagtgtaaaatttcttttttacctcactatcttgctc |
16417642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 16416181 - 16416340
Alignment:
| Q |
53 |
ctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtatagattaaagttaccatt |
152 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||| | ||||| |||||||||| | | | | || ||| |||||| || |||| || |
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| T |
16416181 |
ctggcaggtcttctggtttagggggaataggagccatgttgcaaaggaaagaatctttccaagtagcagctggtgcggtatatagagcaatattactata |
16416280 |
T |
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| Q |
153 |
atacataaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctc |
212 |
Q |
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| T |
16416281 |
atgcataaaaggtttatgttcacgtgtataaaattccttcttgacctcactatcttgctc |
16416340 |
T |
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