View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18495_low_2 (Length: 588)

Name: NF18495_low_2
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18495_low_2
NF18495_low_2
[»] chr3 (39 HSPs)
chr3 (1-576)||(22207593-22208168)
chr3 (1-116)||(22615577-22615692)
chr3 (3-124)||(22179442-22179563)
chr3 (13-117)||(22104755-22104859)
chr3 (453-521)||(22431909-22431977)
chr3 (3-117)||(22028032-22028146)
chr3 (3-117)||(22187020-22187134)
chr3 (450-576)||(22459217-22459343)
chr3 (450-576)||(22482198-22482324)
chr3 (1-116)||(21937186-21937301)
chr3 (1-88)||(22657384-22657471)
chr3 (1-115)||(21945658-21945772)
chr3 (3-117)||(22034549-22034663)
chr3 (3-117)||(22052765-22052879)
chr3 (1-117)||(22115117-22115233)
chr3 (39-117)||(21930453-21930531)
chr3 (414-502)||(22358727-22358815)
chr3 (453-521)||(22443500-22443568)
chr3 (1-88)||(30989623-30989710)
chr3 (453-502)||(22368670-22368719)
chr3 (453-502)||(22632626-22632675)
chr3 (453-502)||(22636267-22636316)
chr3 (33-134)||(22648508-22648609)
chr3 (414-494)||(22437356-22437436)
chr3 (414-502)||(22631191-22631279)
chr3 (403-502)||(21936812-21936911)
chr3 (404-491)||(22104393-22104480)
chr3 (33-136)||(22621264-22621367)
chr3 (456-502)||(2748683-2748729)
chr3 (456-502)||(2768754-2768800)
chr3 (456-502)||(2839007-2839053)
chr3 (456-502)||(2856217-2856263)
chr3 (461-502)||(3221871-3221912)
chr3 (13-102)||(18967315-18967404)
chr3 (33-97)||(2749082-2749146)
chr3 (453-501)||(22370911-22370959)
chr3 (336-384)||(22431804-22431852)
chr3 (414-502)||(22468670-22468758)
chr3 (405-493)||(30990003-30990091)
[»] chr1 (3 HSPs)
chr1 (1-116)||(34975415-34975530)
chr1 (1-116)||(34989250-34989365)
chr1 (1-94)||(34980217-34980310)
[»] chr8 (1 HSPs)
chr8 (1-124)||(27294573-27294696)


Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 22208168 - 22207593
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22208168 tgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 22208069  T
Q  101 gacaacagtgagctcttttcttccatctatcaacaaattaaccaattcatcccttggggcttcgaatcccacaacttgagcttctccaatgtaaaatgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22208068 gacaacagtgagctcttttcttccatctatcaacaaattaaccaattcatcccttggggcttcgaatcccacaacttgagcttctccaatgtaaaatgga 22207969  T
Q  201 gcctctctaaggttgttcaatatggtgttttcatttgctgcagaactacttgatcctcgtgtcaaagatgatttgatttggaggaatccatggttttttc 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22207968 gcctctctaaggttgttcaatatggtgttttcagttgctgcagaactacttgatcctcgtgtcaaagatgatttgatttggaagaatccatggttttttc 22207869  T
Q  301 caccagtatcatccattgcactaactagtgacttaatgtcctgaatcttgtaagctatttgtagatgaagaatcctggttttgaaaaagtctttagtcac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22207868 caccagtatcatccattgcactaactagtgacttaatgtcctgaatcttgtaagctatttgtagacgaagaatcctggttttgaaaaagtctttagtcac 22207769  T
Q  401 aggaagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagc 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22207768 aggaagcaaagctgcacatccaggatcatgaggctgttgtccctcacatatcatatattcatcaatgacatcttgtatctgaaaagatgcttctctcagc 22207669  T
Q  501 tgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagcttcggtcaatctatctgcattgttgatga 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  22207668 tgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagcttcggtcattctatctgtattgttgatga 22207593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22615577 - 22615692
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||||||||||||| ||||  |||||| ||||| |||||||| | |||||||||||| |||||||| ||||||||||| || ||||| ||    
T  22615577 tgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacaga 22615676  T
Q  101 gacaacagtgagctct 116  Q
    |||||||||| |||||    
T  22615677 gacaacagtgcgctct 22615692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 22179563 - 22179442
Alignment:
Q  3 atccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||||| ||||||||||||| |||||| |  || |||||||||||||||| |||||| ||||||||||| |||||||||||||| || |||||  | |    
T  22179563 atccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccacgaata 22179464  T
Q  103 caacagtgagctcttttcttcc 124  Q
    | |||||| ||||||| |||||    
T  22179463 ccacagtgcgctctttccttcc 22179442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 22104859 - 22104755
Alignment:
Q  13 gacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgagacaacagtgag 112  Q
    |||||||||||| |||||| || || |||||||||||||||  |||||| ||||||||||| |||||||||||||| || |||||||| || |||||| |    
T  22104859 gacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcg 22104760  T
Q  113 ctctt 117  Q
    |||||    
T  22104759 ctctt 22104755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 22431909 - 22431977
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgatt 521  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  22431909 atataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgtttgatctttgctttgatt 22431977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 22028146 - 22028032
Alignment:
Q  3 atccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||||| ||||||||||||| ||| || |  || |||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||| || |    
T  22028146 atccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaca 22028047  T
Q  103 caacagtgagctctt 117  Q
    | |||||| ||||||    
T  22028046 ccacagtgcgctctt 22028032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 22187134 - 22187020
Alignment:
Q  3 atccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||||| ||||||||||||| ||| || |  || |||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||| || |    
T  22187134 atccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaa 22187035  T
Q  103 caacagtgagctctt 117  Q
     ||||||| ||||||    
T  22187034 gaacagtgcgctctt 22187020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 576
Target Start/End: Original strand, 22459217 - 22459343
Alignment:
Q  450 atcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagctt 549  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| | |||||  ||||| ||||||||||||| || |  | |||||| |||||||| |    
T  22459217 atcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttgcattgtcatcttcagcat 22459316  T
Q  550 cggtcaatctatctgcattgttgatga 576  Q
    | |  | ||||||||||||||||||||    
T  22459317 cagctattctatctgcattgttgatga 22459343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 576
Target Start/End: Original strand, 22482198 - 22482324
Alignment:
Q  450 atcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgattccgtcgcgcgtattgtcttcttcagctt 549  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| | |||||  ||||| ||||||||||||| || |  | |||||| |||||||| |    
T  22482198 atcatatattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgcttgatccttgctttgattccttcacttgcattgtcatcttcagcat 22482297  T
Q  550 cggtcaatctatctgcattgttgatga 576  Q
    | |  | ||||||||||||||||||||    
T  22482298 cagctattctatctgcattgttgatga 22482324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21937301 - 21937186
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||||||||||||| |||||  || || |||||||||||| ||| ||| || ||||| ||||| |||||||||||||| || ||||| ||    
T  21937301 tgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcctaccacaga 21937202  T
Q  101 gacaacagtgagctct 116  Q
     ||||||||| |||||    
T  21937201 aacaacagtgcgctct 21937186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22657384 - 22657471
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccat 88  Q
    ||||||| || ||||| ||||||| ||||| |||||||||||||||||||||||  || |||||||| ||||| ||||||||||||||    
T  22657384 tgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccat 22657471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 21945772 - 21945658
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    ||||||||||  |||||||||||| || ||| || || |||||||||||||||| |||||| ||||| ||||| |||||||||||||| || ||||| ||    
T  21945772 tgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacgga 21945673  T
Q  101 gacaacagtgagctc 115  Q
     || |||||| ||||    
T  21945672 aactacagtgcgctc 21945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 22034663 - 22034549
Alignment:
Q  3 atccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||||| ||| ||||||||| ||| || |  || |||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||| || |    
T  22034663 atccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaca 22034564  T
Q  103 caacagtgagctctt 117  Q
    | |||||| ||||||    
T  22034563 ccacagtgcgctctt 22034549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 22052879 - 22052765
Alignment:
Q  3 atccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||||| ||||||||||| | |||||| |  || |||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||  || |    
T  22052879 atccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaa 22052780  T
Q  103 caacagtgagctctt 117  Q
    | |||||| ||||||    
T  22052779 ccacagtgcgctctt 22052765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22115233 - 22115117
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||||||||||||| |||||| |  || |||||||||||||||| ||| |  ||||| ||||| |||||||||||||| || ||||| ||    
T  22115233 tgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctcccattcctaccacaga 22115134  T
Q  101 gacaacagtgagctctt 117  Q
     | ||||||| ||||||    
T  22115133 aagaacagtgcgctctt 22115117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 21930531 - 21930453
Alignment:
Q  39 ttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgagacaacagtgagctctt 117  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||| || || |||||| ||||||    
T  21930531 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctctt 21930453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 502
Target Start/End: Original strand, 22358727 - 22358815
Alignment:
Q  414 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  22358727 gcacatccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctg 22358815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 22443500 - 22443568
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctgtctgatctttgctttgatt 521  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||| |||| ||||| |||||||||||    
T  22443500 atataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttgatt 22443568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30989623 - 30989710
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccat 88  Q
    |||||||||| ||||||||||||| |||||| || |   || |||||||||||| ||| | |||||| ||||||||||||||||||||    
T  30989623 tgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctcccat 30989710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 22368670 - 22368719
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||| |||||||||||||||| |||||||||||||| |||| |||||||    
T  22368670 atataatcatcaatgacatcttctatgtgaaaagatgtttctatcagctg 22368719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 22632626 - 22632675
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  22632626 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctg 22632675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 22636267 - 22636316
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  22636267 atataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctg 22636316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 22648508 - 22648609
Alignment:
Q  33 acctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgagacaacagtgagctcttttcttccatctatca 132  Q
    ||||||||||||||||| ||||   |||||||||| ||||| ||| |||||||||| || ||||| ||||  |||||| |||||  |||||| |||| ||    
T  22648508 acctctttgctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctacca 22648607  T
Q  133 ac 134  Q
    ||    
T  22648608 ac 22648609  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 22437356 - 22437436
Alignment:
Q  414 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttct 494  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| |||||||||||||||| ||||| |||||||||||||    
T  22437356 gcacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttct 22437436  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 502
Target Start/End: Original strand, 22631191 - 22631279
Alignment:
Q  414 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||||||||||||| |||  |||||| |||||   |  ||||| ||||||||||||||||  ||||| |||||||||||| |||||||    
T  22631191 gcacatccaggatcaggagcatgttgttcctcatggaagatataatcatcaatgacatcttccatgtggaaagatgcttctatcagctg 22631279  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 502
Target Start/End: Complemental strand, 21936911 - 21936812
Alignment:
Q  403 gaagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    ||||||||||| |||||||| || |||||||||  |||||  ||   ||||||||||||||||||| ||||| ||||  ||||| |||||| || |||||    
T  21936911 gaagtaaagctacacatccatgaccatgaggcttctgtcctacatggatcatatattcatcaatgatatcttctatgcaaaaagctgcttccctaagctg 21936812  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 491
Target Start/End: Complemental strand, 22104480 - 22104393
Alignment:
Q  404 aagtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgct 491  Q
    ||||| |||| |||||||||||||| ||||||| |||||  ||   |||||||| |||||||||| ||||| |||| |||||| ||||    
T  22104480 aagtatagctacacatccaggatcacgaggctgctgtcctacatggatcatatactcatcaatgatatcttctatgcgaaaagctgct 22104393  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 22621264 - 22621367
Alignment:
Q  33 acctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgagacaacagtgagctcttttcttccatctatca 132  Q
    |||||||||||||| ||||| |  ||||||||||| | ||| ||||| |||||||| || ||||| ||||  |||||  |||||| ||||||||| | ||    
T  22621264 acctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttccatccacca 22621363  T
Q  133 acaa 136  Q
    ||||    
T  22621364 acaa 22621367  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 2748729 - 2748683
Alignment:
Q  456 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2748729 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2748683  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 2768800 - 2768754
Alignment:
Q  456 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2768800 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2768754  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 2839007 - 2839053
Alignment:
Q  456 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2839007 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2839053  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 2856217 - 2856263
Alignment:
Q  456 tattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2856217 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctg 2856263  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 502
Target Start/End: Original strand, 3221871 - 3221912
Alignment:
Q  461 atcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  3221871 atcaatcacatcttctatgtgaaaagatgcttctcttagctg 3221912  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 18967315 - 18967404
Alignment:
Q  13 gacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccgaga 102  Q
    |||||| ||||| |||||| || || ||| ||||| |||||  ||| || ||||||||||| |||||||||||||| || ||||| ||||    
T  18967315 gacaattaaagtgtccaatgacatccttgttgtcagaaactctctttgctagagttgtttttccttgccctcccattcctaccacagaga 18967404  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 2749146 - 2749082
Alignment:
Q  33 acctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccac 97  Q
    |||| |||||| ||||||||| ||||||||||||| ||||| ||| | |||||||| || |||||    
T  2749146 acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 2749082  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 501
Target Start/End: Original strand, 22370911 - 22370959
Alignment:
Q  453 atatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagct 501  Q
    |||||||||||||||||||||| ||||| |||||||  |||| ||||||    
T  22370911 atatattcatcaatgacatcttctatgtaaaaagatatttctttcagct 22370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 22431804 - 22431852
Alignment:
Q  336 atgtcctgaatcttgtaagctatttgtagatgaagaatcctggttttga 384  Q
    |||| ||||||||||||||||||||| ||| |||||||| | |||||||    
T  22431804 atgttctgaatcttgtaagctatttggagacgaagaatcttagttttga 22431852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 502
Target Start/End: Original strand, 22468670 - 22468758
Alignment:
Q  414 gcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttctctcagctg 502  Q
    |||||||||||||||  ||  |||||| |||||  ||  ||||| |||||||  ||||||| ||||||| ||||||||||| |||||||    
T  22468670 gcacatccaggatcagaagattgttgttcctcaagtaagatataatcatcaaccacatcttctatgtgataagatgcttctatcagctg 22468758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 30990003 - 30990091
Alignment:
Q  405 agtaaagctgcacatccaggatcatgaggctgttgtccctcacctatcatatattcatcaatgacatcttgtatgtgaaaagatgcttc 493  Q
    ||||||| | ||||||||||||||||||| ||||||| | ||   |||| ||| ||||| |||| ||||| |||| |||||| ||||||    
T  30990003 agtaaagatacacatccaggatcatgaggatgttgtctcacatggatcaaataatcatcgatgatatcttctatgcgaaaagctgcttc 30990091  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34975530 - 34975415
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||||| ||||||| ||| | |||||||||||| |||||||| |  || |||||||| ||||| |||||||||||||||||||| || ||    
T  34975530 tgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacaga 34975431  T
Q  101 gacaacagtgagctct 116  Q
    ||  |||||| |||||    
T  34975430 gatgacagtgcgctct 34975415  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34989365 - 34989250
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||||| ||||||| ||| | |||||||||||| |||||||| |  || |||||||| ||||| |||||||||||||||||||| || ||    
T  34989365 tgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacaga 34989266  T
Q  101 gacaacagtgagctct 116  Q
    ||  |||||| |||||    
T  34989265 gatgacagtgcgctct 34989250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 34980310 - 34980217
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaac 94  Q
    |||||||||| ||||| ||||||| ||| | |||||||||||| ||||||||||  || ||||||||| |||| |||||||||||||| |||||    
T  34980310 tgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaac 34980217  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27294696 - 27294573
Alignment:
Q  1 tgatccatacgcgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccaccga 100  Q
    |||||||||| ||| | |||| || ||| || || || |||||||||||||||| |||| | ||||| ||||| ||||| |||||||| || ||||| ||    
T  27294696 tgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacaga 27294597  T
Q  101 gacaacagtgagctcttttcttcc 124  Q
     || ||||||  |||||| |||||    
T  27294596 aactacagtgccctctttccttcc 27294573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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