View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18495_low_3 (Length: 576)
Name: NF18495_low_3
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 46 - 558
Target Start/End: Original strand, 42236141 - 42236653
Alignment:
| Q |
46 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236141 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
42236240 |
T |
|
| Q |
146 |
caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaagag |
245 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42236241 |
caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaggag |
42236340 |
T |
|
| Q |
246 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236341 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
42236440 |
T |
|
| Q |
346 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236441 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
42236540 |
T |
|
| Q |
446 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaagaaaacaatcacaaagaaa |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42236541 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaaggaaacaatcacaaagaaa |
42236640 |
T |
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| Q |
546 |
caaccccactcca |
558 |
Q |
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||||||||||||| |
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| T |
42236641 |
caaccccactcca |
42236653 |
T |
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