View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18495_low_4 (Length: 556)

Name: NF18495_low_4
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18495_low_4
NF18495_low_4
[»] chr1 (15 HSPs)
chr1 (115-528)||(9219243-9219655)
chr1 (416-537)||(9162578-9162699)
chr1 (433-525)||(9156784-9156876)
chr1 (433-525)||(9171392-9171484)
chr1 (433-525)||(9179374-9179466)
chr1 (418-525)||(9201067-9201174)
chr1 (22-67)||(9219150-9219195)
chr1 (115-240)||(9162334-9162459)
chr1 (23-67)||(9156330-9156374)
chr1 (22-63)||(9162241-9162282)
chr1 (120-190)||(9118043-9118113)
chr1 (22-67)||(9171067-9171112)
chr1 (22-67)||(9179049-9179094)
chr1 (22-67)||(9200634-9200679)
chr1 (119-179)||(9200731-9200791)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 115 - 528
Target Start/End: Original strand, 9219243 - 9219655
Alignment:
Q  115 gtacgtcaagtatagagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgtttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9219243 gtacgtcaagtatagagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgtttt 9219342  T
Q  215 ataaattaatatcaatagctaacatgcatgctgaatactttaatcatannnnnnncctggtcttaacccttcggcccttttagtaatcttgagttcgact 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||| ||||||||||| ||| |||||| |||    
T  9219343 ataaattaatatcaatagctaacatgcatgctgaataccttaatcatatttttttcctggtcttaacccttcgacccttttagtagtctggagttcaact 9219442  T
Q  315 taaacttaggtaaatgtaactaaatattgttctagagtcggttatcaaactcgagtatttgcaactgattcaatcctaactaaaacttgtgacaatatat 414  Q
    |||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||| |||||| || |||||| |||||||    
T  9219443 taaagttagataaatgtaactaaaaattgttctagagtcagttatcaaactcgagtattcgc-actgattcaatcttaactagaaattgtgaaaatatat 9219541  T
Q  415 gtgggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcagga 514  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  9219542 gtgggttattcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagattgtccattagga 9219641  T
Q  515 caaaaacattcgta 528  Q
    ||||||||||||||    
T  9219642 caaaaacattcgta 9219655  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 416 - 537
Target Start/End: Original strand, 9162578 - 9162699
Alignment:
Q  416 tgggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggac 515  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  9162578 tgggctatgtttagtgacataccaatggcaaccttgataacaatatctcgtctatgacaacctccttcaagtgttccatttccagattgtccatcaggac 9162677  T
Q  516 aaaaacattcgtatgatccatc 537  Q
    | |||||||| ||| |||||||    
T  9162678 agaaacattcatataatccatc 9162699  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 525
Target Start/End: Original strand, 9156784 - 9156876
Alignment:
Q  433 cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattc 525  Q
    ||||||||||||||||||||| |  |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9156784 cttaccaatggcaaccttggtgatgacctctcgtctatgacaccctccttccaatgttccatttccagagtgtccatcaggacagaaacattc 9156876  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 525
Target Start/End: Original strand, 9171392 - 9171484
Alignment:
Q  433 cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattc 525  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||| ||||||||    
T  9171392 cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattc 9171484  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 525
Target Start/End: Original strand, 9179374 - 9179466
Alignment:
Q  433 cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattc 525  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||| ||||||||    
T  9179374 cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattc 9179466  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 525
Target Start/End: Original strand, 9201067 - 9201174
Alignment:
Q  418 ggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaa 517  Q
    ||||||||||||   ||||||||| ||||||||||||| || |||| || |||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  9201067 ggctatgcttaggttcttaccaattgcaaccttggtaataacatcttgtttatgacaacctcctgccaacgttccatttccagattgtccatcaggacaa 9201166  T
Q  518 aaacattc 525  Q
    ||||||||    
T  9201167 aaacattc 9201174  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9219150 - 9219195
Alignment:
Q  22 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9219150 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 9219195  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 9162334 - 9162459
Alignment:
Q  115 gtacgtcaagtatagagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgtttt 214  Q
    ||||||||||||||||  ||||| |||||||||||| |  || | ||||||||||| |||||||||| || ||| ||| ||  | || || ||||||| |    
T  9162334 gtacgtcaagtatagaactgaaatcgccacaaatagaataatgattccagcacttgctcctgcatttgaaatgtattgaagtcaattcataaattgttct 9162433  T
Q  215 ataaattaatatcaatagctaacatg 240  Q
    ||||| ||||||| ||||||||||||    
T  9162434 ataaaataatatcgatagctaacatg 9162459  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9156330 - 9156374
Alignment:
Q  23 gtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 67  Q
    |||||||||||||| |||||||||||||||||||| |||||||||    
T  9156330 gtgtcttctcttgtagatagttgttgtagcaaaatggaaccacca 9156374  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 9162241 - 9162282
Alignment:
Q  22 agtgtcttctcttgttgatagttgttgtagcaaaatagaacc 63  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  9162241 agtgtcttctcttgttgatagctgttgtagcaatatagaacc 9162282  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 9118113 - 9118043
Alignment:
Q  120 tcaagtatagagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgt 190  Q
    |||||||||||||||||| | |||||||||| |  |  | |||||||||||||||||||||| || |||||    
T  9118113 tcaagtatagagatgaaatccccacaaatagaataacgattccagcacttgatcctgcatttgaaatgtgt 9118043  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9171067 - 9171112
Alignment:
Q  22 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 67  Q
    ||||||||| ||||| || ||||||||||||||||| |||||||||    
T  9171067 agtgtcttcacttgtagacagttgttgtagcaaaatggaaccacca 9171112  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9179049 - 9179094
Alignment:
Q  22 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 67  Q
    ||||||||| ||||| || ||||||||||||||||| |||||||||    
T  9179049 agtgtcttcacttgtagacagttgttgtagcaaaatggaaccacca 9179094  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9200634 - 9200679
Alignment:
Q  22 agtgtcttctcttgttgatagttgttgtagcaaaatagaaccacca 67  Q
    ||||||||||||||| |||||||| |||| |||||| |||||||||    
T  9200634 agtgtcttctcttgtagatagttgctgtaccaaaatggaaccacca 9200679  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 9200731 - 9200791
Alignment:
Q  119 gtcaagtatagagatgaaaccgccacaaataggactattagtccagcacttgatcctgcat 179  Q
    |||||||||||||| |||| ||| |||||||| || || | ||||||||||| ||||||||    
T  9200731 gtcaagtatagagaagaaatcgcgacaaatagaacaatgattccagcacttgctcctgcat 9200791  T

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