View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18495_low_7 (Length: 354)
Name: NF18495_low_7
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 9156436 - 9156715
Alignment:
| Q |
6 |
gagatgaaattgtcacaaacaggacaatgagtccagcacttgcccctgcattggaaatgtgttccaagccaattcattaattgttctataaattaacatc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9156436 |
gagaagaaattgtcacaaacaggacaatgagtccagcacttgcccctgcattggaaatgtgttcgaagccaattcattaattgttctataaattaacatc |
9156535 |
T |
|
| Q |
106 |
aaaatctaattaacacgttgaacccaaaatagaaattccagtcatatccctcgattcttcatggagaagaaaactgaaaatttaaagttaagtaaatgag |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9156536 |
aaaatctaattaacacgttgaatccaaaatagaaattctagtcatatccctcgattcttcacgaagaagaaaactgaaaatttaaagttaagtaaatgag |
9156635 |
T |
|
| Q |
206 |
acttaagattgatctagagttgtaattgaatttgagtattttctcgattgatttgttcttaaacaaaattatcgacgaata |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
9156636 |
acttaagattgatctagagttgtaattgaatttgaatattttctcgattgatttgatctt-aataaaattatcgacgaata |
9156715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 9156771 - 9156815
Alignment:
| Q |
295 |
atatgcttaggtgcttaccaatggcaaccttggtgatgacctctc |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9156771 |
atatgcttaggtgcttaccaatggcaaccttggtgatgacctctc |
9156815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 9171368 - 9171412
Alignment:
| Q |
283 |
aataaattagggatatgcttaggtgcttaccaatggcaaccttggt |
328 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
9171368 |
aataaattagggttatg-ttaggtgcttaccaatggcaaccttggt |
9171412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 9179350 - 9179394
Alignment:
| Q |
283 |
aataaattagggatatgcttaggtgcttaccaatggcaaccttggt |
328 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
9179350 |
aataaattagggttatg-ttaggtgcttaccaatggcaaccttggt |
9179394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 9162352 - 9162438
Alignment:
| Q |
10 |
tgaaattgtcacaaacaggacaatgagtccagcacttgcccctgcattggaaatgtgttccaagccaattcattaattgttctataaa |
97 |
Q |
| |
|
|||||| | |||||| || | ||||| |||||||||||| |||||||| ||||||| || ||| |||||||| |||||||||||||| |
|
|
| T |
9162352 |
tgaaatcgccacaaatagaataatgattccagcacttgctcctgcatttgaaatgtatt-gaagtcaattcataaattgttctataaa |
9162438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University