View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18495_low_8 (Length: 279)
Name: NF18495_low_8
Description: NF18495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18495_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 22208159 - 22208415
Alignment:
| Q |
5 |
gtatggatcacagtgtctcgacacacagttgaaggattgctgagggacatgttgcaaaacatttacaaacaaacagaagaagatcttccttgtagaattt |
104 |
Q |
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| T |
22208159 |
gtatggatcacagtgtctcgacacacagttgaaggattgctgagggacatgttgcaaaacatttacaaacaaacagaagaagatcttccttgtagaattt |
22208258 |
T |
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| Q |
105 |
ctgaaatggatcgaaggtcgttaattgataacatgagaaacttcttgcaaaacaaaaggtatatcatcttctttgatgaagtgtggaatgagcaattttg |
204 |
Q |
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| T |
22208259 |
ctgaaatggatcgaaggtcgttaattgataacgtgagaaacttcttgcaaaacaaaaggtatatcatcttctttgatgaagtgtggaatgagcaattttg |
22208358 |
T |
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| Q |
205 |
gaatgatattggattttctttgattgatagtaaaaaaggaagtagggtattaatcac |
261 |
Q |
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| T |
22208359 |
gaatgatattggattttctttgattgatagtaaaaaaggaagtagggtattaatcac |
22208415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 22034828 - 22034902
Alignment:
| Q |
174 |
tctttgatgaagtgtggaatgagcaattttggaatgatattggattttctttgattgatagtaaaaaaggaagta |
248 |
Q |
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| T |
22034828 |
tctttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaagta |
22034902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 22115253 - 22115470
Alignment:
| Q |
31 |
agttgaaggattgctgagggacatgttgcaaaacatttacaaacaaacagaagaagatcttccttgtagaatttctgaaatggatcgaaggtcgttaatt |
130 |
Q |
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| T |
22115253 |
agttgaagggttgttgagggatatgttgccaaaaatttacaaacaagaaggagacaatccaccttcgagtatttatcaaatggatcgaggattattaact |
22115352 |
T |
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| Q |
131 |
gataacatgagaaacttcttgcaaaacaaaaggtatatcatcttctttgatgaagtgtggaatgagcaattttggaatgatattggattttctttgattg |
230 |
Q |
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||| | ||||||| | |||||| || || ||||| | || | |||||||| || ||||||| || |||||| ||||||||| ||||||| | |||| |
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| T |
22115353 |
gatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattg |
22115452 |
T |
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| Q |
231 |
atagtaaaaaaggaagta |
248 |
Q |
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| T |
22115453 |
atagtaaaaatggaagta |
22115470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 30989602 - 30989540
Alignment:
| Q |
32 |
gttgaaggattgctgagggacatgttgcaaaacatttacaaacaaacagaagaagatcttcct |
94 |
Q |
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|||||||| ||| ||||||||||||||| ||| |||||||||||| |||||||||| |||| |
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| T |
30989602 |
gttgaagggttgttgagggacatgttgctaaagttttacaaacaaaacgaagaagatcctcct |
30989540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 21930590 - 21930635
Alignment:
| Q |
32 |
gttgaaggattgctgagggacatgttgcaaaacatttacaaacaaa |
77 |
Q |
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|||||||| ||| ||||||||||||||| ||| ||||||||||||| |
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| T |
21930590 |
gttgaagggttgttgagggacatgttgctaaaaatttacaaacaaa |
21930635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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