View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18496_high_14 (Length: 221)
Name: NF18496_high_14
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18496_high_14 |
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| [»] scaffold0911 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 10033303 - 10033118
Alignment:
| Q |
19 |
gttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgc |
118 |
Q |
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| T |
10033303 |
gttatggcattggaacattcaacaaatgtgcaatccagatcaacagaaacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgc |
10033204 |
T |
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| Q |
119 |
gtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtat |
204 |
Q |
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| T |
10033203 |
gtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcacattcgggagtat |
10033118 |
T |
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Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 8479529 - 8479714
Alignment:
| Q |
19 |
gttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgc |
118 |
Q |
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| T |
8479529 |
gttatggcattggaacattcagcaaatgtgcaatccagaccagcagagacagaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgc |
8479628 |
T |
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| Q |
119 |
gtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtat |
204 |
Q |
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| T |
8479629 |
gtgaagtttcaattcagtccaaggaaatccaggtttcgaaaaatgttcaaaatgacttggatttataggctcgcattcgggagtat |
8479714 |
T |
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Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 19936671 - 19936486
Alignment:
| Q |
19 |
gttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgc |
118 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19936671 |
gttatggcattggaacagtcagcaaatgtgcaatccagaccagcagaggcaaaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgc |
19936572 |
T |
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| Q |
119 |
gtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtat |
204 |
Q |
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| T |
19936571 |
gtgaagtttcaattcaatccaaggaaatccaggtttcgaaaaatgttcaaaatgacttggatttatgggctcgcattcgggagtat |
19936486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 41067895 - 41068079
Alignment:
| Q |
19 |
gttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgc |
118 |
Q |
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| T |
41067895 |
gttatggcattggaacattcagctaatgtgcaatccagaccagcagagacagaagctaattcaagtgcagcagctaatgagtttactgctgatcaggtgc |
41067994 |
T |
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| Q |
119 |
gtgaagtttcaattcagtccagggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagta |
203 |
Q |
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| T |
41067995 |
gtgaagtttcaattcagtccaaggaaatccaggtttcgaaaaatgttcaaaatgacttggatttatgggctcgcattcgggagta |
41068079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 2934 - 2887
Alignment:
| Q |
157 |
aaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtat |
204 |
Q |
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| T |
2934 |
aaaaatgtacaaaatgacttggatttatgggctcgcattcgcgagtat |
2887 |
T |
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