View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18496_high_3 (Length: 499)
Name: NF18496_high_3
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18496_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 487
Target Start/End: Complemental strand, 46104777 - 46104305
Alignment:
| Q |
13 |
taaacaacatgacttgacttgaactgacccaagggccccttattttatcacttagatgtaatcgtgtttgtagtggaccaaactttgtccacaaccgaac |
112 |
Q |
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| T |
46104777 |
taaacaacatgacttgacttgaactgacccaagggccccttattttatcacttagatgtaatcgtgtttgtagtggaccaaactttgtccacaaccgaac |
46104678 |
T |
|
| Q |
113 |
ataatatgatgcaatcctatatatggtcgctagccaaatttctcattcacctttgaaagttacattttctatttagaaaaagttgcttctatcccttcta |
212 |
Q |
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| T |
46104677 |
ataatatgatgcaatcctatat--ggtcgttagccaaatttctcattcacctttgaaagttacattttccatttagaaaaagttgcttctatcccttcta |
46104580 |
T |
|
| Q |
213 |
taataatatatcatcaaataaaaattacatgaatcacctcacaaatttttcttattgattcctttgaactattttaacttccttgttgtgaattcgttca |
312 |
Q |
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| T |
46104579 |
taataatatatcatcaaataaaaattacatgaatcacctcacaaatttttcttattgattcctttgaactattttaacttccttgttgtgaattcgttca |
46104480 |
T |
|
| Q |
313 |
ttcatcactcaaatcactagtgttacgtaccatacacaaaacatgaagaaactaactccctcctgtcttttcattcatctcaatttcattccctcaaata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
46104479 |
ttcatcactcaaatcactagtgttacgtaccatacacaaaacatgaagaaactaactccctcttgtcttttccttcatctcaatttcattccctcaaata |
46104380 |
T |
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| Q |
413 |
actttccacatgatcatgtgcttttacattgaacccacttggcaaatgcttcaagtgttttgatatcagctctgt |
487 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46104379 |
acttttcacatgatcatgtgcttttacattgaacccacttggcaaatgcttcaagtgttttgatatcagctctgt |
46104305 |
T |
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