View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18496_low_1 (Length: 3308)

Name: NF18496_low_1
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18496_low_1
NF18496_low_1
[»] chr7 (7 HSPs)
chr7 (18-1069)||(31924100-31925150)
chr7 (1108-1979)||(31923189-31924061)
chr7 (2121-2675)||(31922472-31923007)
chr7 (3084-3308)||(31916282-31916507)
chr7 (2794-3038)||(31922090-31922334)
chr7 (2045-2104)||(31923064-31923123)
chr7 (2736-2792)||(31922356-31922412)
[»] chr1 (5 HSPs)
chr1 (2572-2642)||(17109147-17109217)
chr1 (2897-2980)||(30709117-30709200)
chr1 (2569-2674)||(30708685-30708791)
chr1 (691-751)||(26462652-26462712)
chr1 (690-752)||(16808956-16809018)
[»] chr2 (3 HSPs)
chr2 (2749-2790)||(17906196-17906237)
chr2 (2572-2625)||(17905478-17905531)
chr2 (787-837)||(13744245-13744295)
[»] chr8 (3 HSPs)
chr8 (2849-2979)||(14164480-14164611)
chr8 (2569-2646)||(33892515-33892592)
chr8 (2570-2612)||(32496992-32497034)
[»] chr6 (5 HSPs)
chr6 (2883-3027)||(13231778-13231925)
chr6 (2570-2612)||(28298983-28299025)
chr6 (2570-2612)||(28513048-28513090)
chr6 (2842-2946)||(28299206-28299311)
chr6 (2842-2946)||(28512762-28512867)


Alignment Details
Target: chr7 (Bit Score: 967; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 967; E-Value: 0
Query Start/End: Original strand, 18 - 1069
Target Start/End: Complemental strand, 31925150 - 31924100
Alignment:
Q  18 aagtaaatcagctgttcacatgccatcctcctcttcacagacaaagtggccttttgactgtcaacagcaagaccaagctgaatctcagttccctaaaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31925150 aagtaaatcagctgttcacatgccatcctcctcttcacagacaaagtggccttttgactgtcaacagcaagaccaagctgaatctcagttccctaaaagt 31925051  T
Q  118 catcaagatgaggtattatacctaaatacaaggatctttgttccatacatttcaataaaaaggcaaaagaaatgaaaataaacctcataatccaaaacat 217  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31925050 catcaatatgaggtattatacctaaatagaaggatctttgttccatacatttcaataaaaaggcaaaagaaatgaaaataaacctcataatccaaaacat 31924951  T
Q  218 ctatagaatgctacgtatttgaatatgaaaattttatcaataaacaaaatggactagaagaattaactgctttcataagttaatctagagattgatcaac 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31924950 ctatagaatgctac-tatttgaatatgaaaattttatcaataaacaaaatggactagaagaattaactgctttcataagttaatctatagattgatcaac 31924852  T
Q  318 aagtacctggcctagtgcttgaatagctatagcttccaatacaccctcctgcaagtcatgtggcaaaattttcctatatattgtttaaagttagttccta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31924851 aagtacctggcctagtgcttgaatagctatagcttccaatacaccctcctgcaagtcatgtggcaaaattttcctgtatattgtttaaagttagttccta 31924752  T
Q  418 aataaggtgttcaatgtttgaaatttaaacataaaattttatagagacttacttggtttcagctggtatttgaggaagaattttcctaacacagaactcc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31924751 aataaggtgttcaatgtttgaaatttaaacataaaattttatagagacttacttggtttcagctggtatttgaggaagaattttcctaacacagaactcc 31924652  T
Q  518 aggtaccctgatgctttgagtaacaaatcaattgcttccctcttgctatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtgga 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31924651 aggtaccctgatgctttgagtaacaaatcaattgcttccctcttgctatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtgga 31924552  T
Q  618 tccttcaataggatccgattctatgtaacaccgcacttcacattgaaagcgataaacagtgatccgattctatgacacatgtgattatattcaattgttc 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31924551 tccttcaataggatccgattctatgtaacaccgcacttcacattgaaagctataaacagtgatccgattctatgacacatgtgattatattcaattgttc 31924452  T
Q  718 tattttcttaaattatcatcggtgtcaacgtgtcaatttcatgtctggtgtcaatgttagtgcatcattgctctttataaactcttttaagaccttatat 817  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31924451 tattttcttaaattattatcggtgtcaacgtgtcaatttcgtgtctggtgtcaatgttagtgcatcattgctctttataaactattttaagaccttatat 31924352  T
Q  818 cttttcaatgtggaacttgaannnnnnncaaaatatgcagcattagtaaagtatttaaatgcgtaaataggttatatatcagcacaaaacctgcagacac 917  Q
    |||||||||||||||||||||       ||||||||||| |||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||    
T  31924351 cttttcaatgtggaacttgaatttttttcaaaatatgcatcattagtaaagtatttaaatgcttaaaaagcttatatatcggcacaaaacctgcagacac 31924252  T
Q  918 aaccctgaatccagagtctgaatggtcctttggaatcatcagtgaatcagcctcagacagtgtcagcatagccataaagtgaacacatgatagcacctca 1017  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31924251 aaccctgaatccagagtctgaatggtcctttggaatcatcagtgaatcagcctcagacagtgtcagcatagccataaagtgaacacatgatagcacctca 31924152  T
Q  1018 aaccacacatttgatatactactatcctgccaaattagaagttaccatggtt 1069  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31924151 aaccacacatttgatatactactatcctgccaaattagaatttaccatggtt 31924100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 1108 - 1979
Target Start/End: Complemental strand, 31924061 - 31923189
Alignment:
Q  1108 taagaatgatattgcaagtaaccgtacttgttttccaacttcaaagtttttccacttgaattctattagtccctcaagaccatattctgcatcatacata 1207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31924061 taagaatgatattgcaagtaacagtacttgttttccaacttcaaagtttttccacttgaattctattagtccctcaagaccatattctgcatcatacata 31923962  T
Q  1208 aattataactcatttgacaaatgaagagagcatagagaaaatcaattatatttatctgaagaaatttatgaacctttcttagtaagtccaattagaacag 1307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923961 aattataactcatttgacaaatgaagagagcatagagaaaatcaattatatttatctgaagaaatttatgaacctttcttagtaagtccaattagaacag 31923862  T
Q  1308 acaaatactcattcaaagctcgccgcaattcagctatagctgatccatctgcatcaccaaagaattcaaatttttaaaccatcaaaagatcttcaattac 1407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923861 acaaatactcattcaaagctcgccgcaattcagctatagctgatccatctgcatcaccaaagaattcaaatttttaaaccatcaaaagatcttcaattac 31923762  T
Q  1408 ttttgctatgcataattgagaaagtatgactcagtttaccacatcatcatttttcgataaattctattgaggactaaaaatggaggaatcatattacaag 1507  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31923761 ttttgctatgcataattgagaaagtatgactcagtttgccacatcatcatttttcgataaattctattgaggactaaaagtggaggaatcatattacaag 31923662  T
Q  1508 accaaatacactattaactctaaaagtagtagagtttcaaatgaacaaaccggtatcttctgctaccaacacaatctggttccgaagagacgacaattta 1607  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923661 accaaaaacactattaactctaaaagtagtagagtttcaaatgaacaaaccggtatcttctgctaccaacacaatctggttccgaagagacgacaattta 31923562  T
Q  1608 tcagcaagatcctttggaactaatcctttaagtgctctttgaagatcagattgcactggaattctgattgatggagttaacacaactacttcaggaaagc 1707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923561 tcagcaagatcctttggaactaatcctttaagtgctctttgaagatcagattgcactggaattctgattgatggagttaacacaactacttcaggaaagc 31923462  T
Q  1708 ttgatttcttcttcttatacacagaataagtgcaccccannnnnnnggctaatgatgaatcttatcaagcataacatcctatataaattcaccatccatt 1807  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923461 ttgatttcttcttcttatacacagaataagtgcaccccatttttttggctaatgatgaatcttatcaagcataacatcctatataaattcaccatccatt 31923362  T
Q  1808 gtcacaacttatgtacatgaataattagcatattagacttagtgaggaaatatcatgttataatactttattcatttatat-aaaaaacagttgcaaatg 1906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  31923361 gtcacaacttatgtacatgaataattagcatattagacttagtgaggaaatatcatgttataatactttattcatttatataaaaaaacatttgcaaatg 31923262  T
Q  1907 tgtgtgtaagtgacagaaaggatagttattactggtagattcaaatgtagctgattcatcaatattaaaattt 1979  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923261 tgtgtgtaagtgacagaaaggatagttattactggtagattcaaatgtagctgattcatcaatattaaaattt 31923189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2121 - 2675
Target Start/End: Complemental strand, 31923007 - 31922472
Alignment:
Q  2121 gtatctgactaatgaatctgaagctcaagaaacgagacataaatcacatggacatggcgtagaactctcagcttagttgaaagaagcacgttcagttctt 2220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923007 gtatctgactaatgaatctgaagctcaagaaacgagacataaatcacatggacatggcgtagaactctcagcttagttgaaagaagcacgttcagttctt 31922908  T
Q  2221 ctattgtgnnnnnnnnaaggaaatgcttaatctttacttgaaggacgtgcataggactagattttgttgaaaataatgtattatcatgtgttcatatata 2320  Q
    ||||| ||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  31922907 ctattttgtttttttta-ggaaatgcttaatctttacttgaaggacgtgcataggactagattttgttgaaaataatgtattttcatgtgt--------- 31922818  T
Q  2321 agagaacatgcatgcattcaacaagtcaatagcatggtctggttgtttgtatttatttcaacttgtctactagaagaagggattttttgtttctatatcc 2420  Q
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||    
T  31922817 -------atgcatgcattcaacaagtca-tagcatggtctggttgtttgtatttatttcaacttgtctactagaagaagggattttgtttctatatatcc 31922726  T
Q  2421 cttgtagaaacaacttatgacatttttatagactctcaatgatagttgatgaaaataacccgtagtttatataaaaagttttgacnnnnnnnnncttaat 2520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||         ||||||    
T  31922725 cttgtagaaacaacttatgacatttttatagactctcaatgatagttgatgaaaacaacccgtagtttatatataaag-tttgactttttttttcttaat 31922627  T
Q  2521 aaaaatagcttatacttaaatacttttatgataaatgannnnnnnnnaatgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaacta 2620  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  31922626 aaaaatagcttatacttaaatacttttatgataaatgatttttttttaatgaatcaagagagaaaggaaggcatcaaggagaagctagatatgccaacta 31922527  T
Q  2621 gattgacaatccatagctgctcccattttctgccatttgctttgaaattttattg 2675  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  31922526 gattggcaatccatagctgctcccatcttctgccatctgctttgaaattttattg 31922472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 3084 - 3308
Target Start/End: Complemental strand, 31916507 - 31916282
Alignment:
Q  3084 tcatcttaaagata-cgatcaaactattttcatataaattgtaagtcatttcaaactgttttcatataaatttcataaacaaatgtttatcaaaattaga 3182  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31916507 tcatcttaaagataacgatcaaactgttttcatataaattgtaagtcatttcaaactgttttcatataaatttcataaacaaatgtttatcaaaattaga 31916408  T
Q  3183 tgataacaactagtgaatatgacatgtccttaattgtattgtttatataaattcttcaaaatacatgatgtgaagtactcatataaaagatcgaagagta 3282  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31916407 tgataacaactagtgaatatgacatgtccttaattgtattgtttaaataaattcttcaaaatacatgatgtgaagtactcatataaaagatcgaagagta 31916308  T
Q  3283 acgaatgatgataaataaaaagaaac 3308  Q
    ||||||||||||||||||||||||||    
T  31916307 acgaatgatgataaataaaaagaaac 31916282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 2794 - 3038
Target Start/End: Complemental strand, 31922334 - 31922090
Alignment:
Q  2794 aaagaaatccaccagacaacatttgtaaaatagttgtgccatcggttccaaaacctctaatattccaatagaagacctttattaaactggaggagtgatt 2893  Q
    ||||||| ||||| |||||||||| ||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31922334 aaagaaacccaccggacaacatttataaaacaattgtgccaccggttccaaaacctctaatatttcaatagaagacctttattaaactggaggagtgatt 31922235  T
Q  2894 gcaccttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatcctccgtccggaa 2993  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31922234 gcaccttagactaggttttgtaggcaactcgatagagtagtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatcctccgtccggaa 31922135  T
Q  2994 ccaaaacgtaccgaatcaaattatgatccttttgattagtgatta 3038  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  31922134 ccaaaatgtaccgaatcaaattaagatccttttgattagtgatta 31922090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-24
Query Start/End: Original strand, 2045 - 2104
Target Start/End: Complemental strand, 31923123 - 31923064
Alignment:
Q  2045 gaaggacatagtttggaataactcactggatacagagaggaagacagaaggaggtgtgtg 2104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923123 gaaggacatagtttggaataactcactggatacagagaggaagacagaaggaggtgtgtg 31923064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 0.000000000000001
Query Start/End: Original strand, 2736 - 2792
Target Start/End: Complemental strand, 31922412 - 31922356
Alignment:
Q  2736 gagggaactatgagaatctaaaattcggaagaccatgtttgtccctgtaaaaatcgt 2792  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  31922412 gagggaactatgggaatctaaaattcggaagaccatgtttgttcctgtgaaaatcgt 31922356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-17
Query Start/End: Original strand, 2572 - 2642
Target Start/End: Complemental strand, 17109217 - 17109147
Alignment:
Q  2572 aatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctc 2642  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  17109217 aatcaagagagtaaggaatgcatcaaagagaagctagacatcccaactagattgacaccacatagctgctc 17109147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2897 - 2980
Target Start/End: Original strand, 30709117 - 30709200
Alignment:
Q  2897 ccttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaat 2980  Q
    ||||||||  ||||||||||| |||||||||||||||||  |||| |||||| |||| ||||||||| || |||| ||||||||    
T  30709117 ccttagaccgggttttgtaggaaactcgatagagttgttgtttctacttcttagttatgtagggtgtgaattgttcattagaat 30709200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 2569 - 2674
Target Start/End: Original strand, 30708685 - 30708791
Alignment:
Q  2569 atgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaacta-gattgacaatccatagctgctcccattttctgccatttgctttgaaa 2667  Q
    |||||||||||||| || ||||| ||||| |||||| ||||||||||||||| | ||||||  ||||||||| | ||||  ||| |||  |||| |||||    
T  30708685 atgaatcaagagagcaaagaaggtatcaaagagaagttagacatcccaactagggttgacacaccatagctgttgccatcctctaccacctgctctgaaa 30708784  T
Q  2668 ttttatt 2674  Q
    |||||||    
T  30708785 ttttatt 30708791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 751
Target Start/End: Original strand, 26462652 - 26462712
Alignment:
Q  691 gacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtc 751  Q
    |||||||||||||| |||||||| ||  ||||||||||||||| ||| ||||| |||||||    
T  26462652 gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc 26462712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 752
Target Start/End: Original strand, 16808956 - 16809018
Alignment:
Q  690 tgacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtca 752  Q
    |||||| | |||||||||| |||| ||||||||||||||||||| | ||||||| | ||||||    
T  16808956 tgacacgtatgattatatttaattattctattttcttaaattattaccggtgtcgatgtgtca 16809018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000008
Query Start/End: Original strand, 2749 - 2790
Target Start/End: Original strand, 17906196 - 17906237
Alignment:
Q  2749 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 2790  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17906196 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 17906237  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 2572 - 2625
Target Start/End: Original strand, 17905478 - 17905531
Alignment:
Q  2572 aatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattg 2625  Q
    ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  17905478 aatcaagagagtaaggaaagcataaaggagaagatagacatcccaactagattg 17905531  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 837
Target Start/End: Complemental strand, 13744295 - 13744245
Alignment:
Q  787 gctctttataaactcttttaagaccttatatcttttcaatgtggaacttga 837  Q
    |||||||||||||||||||  | |||||| |||||||||||||| ||||||    
T  13744295 gctctttataaactcttttctggccttatctcttttcaatgtgggacttga 13744245  T

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Target: chr8 (Bit Score: 40; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2849 - 2979
Target Start/End: Original strand, 14164480 - 14164611
Alignment:
Q  2849 tctaatattccaatagaagacctttattaaactggaggagtgattgcacc-ttagactaggttttgtaggcaactcgatagagttgtttattctgcttct 2947  Q
    |||||||||||||||||||||||| ||| |    ||||||| |||||||| ||||||  | |||||||||  |||||||| |||| ||| |||||||| |    
T  14164480 tctaatattccaatagaagaccttcattgagaaagaggagtaattgcacctttagaccggattttgtaggacactcgatatagttcttttttctgctttt 14164579  T
Q  2948 tggttaggtagggtgtaaaatgttaattagaa 2979  Q
    | |||||||| |||||||  |||| |||||||    
T  14164580 tagttaggtaaggtgtaagttgttcattagaa 14164611  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 2569 - 2646
Target Start/End: Original strand, 33892515 - 33892592
Alignment:
Q  2569 atgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctcccat 2646  Q
    |||||||||||||| ||||||  |||||||| |||| ||||||||| ||||||| |||||  | ||| ||||||||||    
T  33892515 atgaatcaagagagtaaggaatacatcaaggggaagttagacatcctaactagactgacacccgataactgctcccat 33892592  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2570 - 2612
Target Start/End: Complemental strand, 32497034 - 32496992
Alignment:
Q  2570 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 2612  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||    
T  32497034 tgaatcaagagagcaagaaagacatcaaggagaagctagacat 32496992  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000008
Query Start/End: Original strand, 2883 - 3027
Target Start/End: Complemental strand, 13231925 - 13231778
Alignment:
Q  2883 gaggagtgattgcacc-ttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatc 2981  Q
    ||||||| |||||||| ||| ||  |||||||||||||| || |||||||| ||| |||| |||||| ||||||||| ||  ||| |||| |||||||||    
T  13231925 gaggagtaattgcacccttataccgggttttgtaggcaattcaatagagttcttttttcttcttcttagttaggtagagtaaaaattgttcattagaatc 13231826  T
Q  2982 ctcc--gtccggaaccaaaacgtaccgaatcaaattatgatccttttg 3027  Q
    ||||   |  |||||||||| ||  |||||||| ||| ||||||||||    
T  13231825 ctccttatttggaaccaaaatgtgacgaatcaagttaagatccttttg 13231778  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 2570 - 2612
Target Start/End: Original strand, 28298983 - 28299025
Alignment:
Q  2570 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 2612  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  28298983 tgaatcaagagagcaaggaaggcatcaaggagaagctacacat 28299025  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 2570 - 2612
Target Start/End: Complemental strand, 28513090 - 28513048
Alignment:
Q  2570 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 2612  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  28513090 tgaatcaagagagcaaggaaggcatcaaggagaagctacacat 28513048  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 2842 - 2946
Target Start/End: Original strand, 28299206 - 28299311
Alignment:
Q  2842 caaaacctctaatattccaatagaagacctttattaaactggaggagtgattgca-ccttagactaggttttgtaggcaactcgatagagttgtttattc 2940  Q
    |||| ||||||| |||||||||||||||||| ||| |   |||||||| ||| || |||||||  ||||||| |||| |||||||||||||| ||| |||    
T  28299206 caaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactcgatagagttcttttttc 28299305  T
Q  2941 tgcttc 2946  Q
     |||||    
T  28299306 cgcttc 28299311  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 2842 - 2946
Target Start/End: Complemental strand, 28512867 - 28512762
Alignment:
Q  2842 caaaacctctaatattccaatagaagacctttattaaactggaggagtgattgca-ccttagactaggttttgtaggcaactcgatagagttgtttattc 2940  Q
    |||| ||||||| |||||||||||||||||| ||| |   |||||||| ||| || |||||||  ||||||| |||| |||||||||||||| ||| |||    
T  28512867 caaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactcgatagagttcttttttc 28512768  T
Q  2941 tgcttc 2946  Q
     |||||    
T  28512767 cgcttc 28512762  T

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