View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18496_low_10 (Length: 263)
Name: NF18496_low_10
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18496_low_10 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 7484 - 7738
Alignment:
| Q |
4 |
attcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagtaccttgctgctacttgtgaaaaatggaaaacacactg |
103 |
Q |
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| T |
7484 |
attcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagactaccttgctgctacttgtgaaaaatgaaaaacgcactg |
7583 |
T |
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| Q |
104 |
tcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggagatttccttgtacaagtatttaatattta |
203 |
Q |
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| T |
7584 |
tcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaattttttctgaaggagatttcctcgtacaagtatttaatattta |
7683 |
T |
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| Q |
204 |
tttgttacattgatttttcgcttacaacttcgtcgattatgaccttcttctcagt |
258 |
Q |
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| T |
7684 |
tttgttacattgatttttcgcttacagcttcgtcgattatgaccttcttttcagt |
7738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 18432387 - 18432641
Alignment:
| Q |
4 |
attcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagtaccttgctgctacttgtgaaaaatggaaaacacactg |
103 |
Q |
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| T |
18432387 |
attcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagactaccttgctgctacttgtgaaaaatgaaaaacgcactg |
18432486 |
T |
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| Q |
104 |
tcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggagatttccttgtacaagtatttaatattta |
203 |
Q |
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| T |
18432487 |
tcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaattttttctgaaggagatttcctcgtacaagtatttaatattta |
18432586 |
T |
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| Q |
204 |
tttgttacattgatttttcgcttacaacttcgtcgattatgaccttcttctcagt |
258 |
Q |
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| T |
18432587 |
tttgttacattgatttttcgcttacagcttcgtcgattatgaccttcttttcagt |
18432641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 18444826 - 18445006
Alignment:
| Q |
77 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
176 |
Q |
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| T |
18444826 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaatttttggtgaaggaga |
18444925 |
T |
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| Q |
177 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttcttctcag |
257 |
Q |
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| T |
18444926 |
tttcctcctacaagtatttaatatttatttgttacattgatttttcgctcacaacttcgtcgattatgaccttcttttcag |
18445006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 18436653 - 18436833
Alignment:
| Q |
77 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
176 |
Q |
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| T |
18436653 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaaggag- |
18436751 |
T |
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| Q |
177 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttcttctcagt |
258 |
Q |
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| T |
18436752 |
tttcctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttcttttcagt |
18436833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 18440928 - 18441100
Alignment:
| Q |
77 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
176 |
Q |
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||||||||||||||| ||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
18440928 |
tacttgtgaaaaatgaaaaacgcactgtcattatggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaagaaga |
18441027 |
T |
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| Q |
177 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgacctt |
249 |
Q |
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| T |
18441028 |
tttcctcgtataagtatttaatatttatttgttacattgatttttcgcttacaccttcgtcgattatcacctt |
18441100 |
T |
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