View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18496_low_2 (Length: 1549)

Name: NF18496_low_2
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18496_low_2
NF18496_low_2
[»] chr7 (7 HSPs)
chr7 (362-916)||(31922472-31923007)
chr7 (1325-1549)||(31916282-31916507)
chr7 (1035-1279)||(31922090-31922334)
chr7 (18-220)||(31923189-31923392)
chr7 (286-345)||(31923064-31923123)
chr7 (977-1033)||(31922356-31922412)
chr7 (1301-1330)||(31921646-31921675)
[»] chr1 (3 HSPs)
chr1 (813-883)||(17109147-17109217)
chr1 (1138-1221)||(30709117-30709200)
chr1 (810-915)||(30708685-30708791)
[»] chr2 (2 HSPs)
chr2 (990-1031)||(17906196-17906237)
chr2 (813-866)||(17905478-17905531)
[»] chr8 (4 HSPs)
chr8 (1090-1220)||(14164480-14164611)
chr8 (810-887)||(33892515-33892592)
chr8 (811-853)||(32496992-32497034)
chr8 (810-887)||(30433886-30433963)
[»] chr6 (5 HSPs)
chr6 (1124-1268)||(13231778-13231925)
chr6 (811-853)||(28298983-28299025)
chr6 (811-853)||(28513048-28513090)
chr6 (1083-1187)||(28299206-28299311)
chr6 (1083-1187)||(28512762-28512867)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 362 - 916
Target Start/End: Complemental strand, 31923007 - 31922472
Alignment:
Q  362 gtatctgactaatgaatctgaagctcaagaaacgagacataaatcacatggacatggcgtagaactctcagcttagttgaaagaagcacgttcagttctt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923007 gtatctgactaatgaatctgaagctcaagaaacgagacataaatcacatggacatggcgtagaactctcagcttagttgaaagaagcacgttcagttctt 31922908  T
Q  462 ctattgtgnnnnnnnnaaggaaatgcttaatctttacttgaaggacgtgcataggactagattttgttgaaaataatgtattatcatgtgttcatatata 561  Q
    ||||| ||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  31922907 ctattttgtttttttta-ggaaatgcttaatctttacttgaaggacgtgcataggactagattttgttgaaaataatgtattttcatgtgt--------- 31922818  T
Q  562 agagaacatgcatgcattcaacaagtcaatagcatggtctggttgtttgtatttatttcaacttgtctactagaagaagggattttttgtttctatatcc 661  Q
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||    
T  31922817 -------atgcatgcattcaacaagtca-tagcatggtctggttgtttgtatttatttcaacttgtctactagaagaagggattttgtttctatatatcc 31922726  T
Q  662 cttgtagaaacaacttatgacatttttatagactctcaatgatagttgatgaaaataacccgtagtttatataaaaagttttgacnnnnnnnnncttaat 761  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||         ||||||    
T  31922725 cttgtagaaacaacttatgacatttttatagactctcaatgatagttgatgaaaacaacccgtagtttatatataaag-tttgactttttttttcttaat 31922627  T
Q  762 aaaaatagcttatacttaaatacttttatgataaatgannnnnnnnnaatgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaacta 861  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  31922626 aaaaatagcttatacttaaatacttttatgataaatgatttttttttaatgaatcaagagagaaaggaaggcatcaaggagaagctagatatgccaacta 31922527  T
Q  862 gattgacaatccatagctgctcccattttctgccatttgctttgaaattttattg 916  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  31922526 gattggcaatccatagctgctcccatcttctgccatctgctttgaaattttattg 31922472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 1325 - 1549
Target Start/End: Complemental strand, 31916507 - 31916282
Alignment:
Q  1325 tcatcttaaagata-cgatcaaactattttcatataaattgtaagtcatttcaaactgttttcatataaatttcataaacaaatgtttatcaaaattaga 1423  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31916507 tcatcttaaagataacgatcaaactgttttcatataaattgtaagtcatttcaaactgttttcatataaatttcataaacaaatgtttatcaaaattaga 31916408  T
Q  1424 tgataacaactagtgaatatgacatgtccttaattgtattgtttatataaattcttcaaaatacatgatgtgaagtactcatataaaagatcgaagagta 1523  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31916407 tgataacaactagtgaatatgacatgtccttaattgtattgtttaaataaattcttcaaaatacatgatgtgaagtactcatataaaagatcgaagagta 31916308  T
Q  1524 acgaatgatgataaataaaaagaaac 1549  Q
    ||||||||||||||||||||||||||    
T  31916307 acgaatgatgataaataaaaagaaac 31916282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 1035 - 1279
Target Start/End: Complemental strand, 31922334 - 31922090
Alignment:
Q  1035 aaagaaatccaccagacaacatttgtaaaatagttgtgccatcggttccaaaacctctaatattccaatagaagacctttattaaactggaggagtgatt 1134  Q
    ||||||| ||||| |||||||||| ||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31922334 aaagaaacccaccggacaacatttataaaacaattgtgccaccggttccaaaacctctaatatttcaatagaagacctttattaaactggaggagtgatt 31922235  T
Q  1135 gcaccttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatcctccgtccggaa 1234  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31922234 gcaccttagactaggttttgtaggcaactcgatagagtagtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatcctccgtccggaa 31922135  T
Q  1235 ccaaaacgtaccgaatcaaattatgatccttttgattagtgatta 1279  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  31922134 ccaaaatgtaccgaatcaaattaagatccttttgattagtgatta 31922090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-103
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 31923392 - 31923189
Alignment:
Q  18 cataacatcctatataaattcaccatccattgtcacaacttatgtacatgaataattagcatattagacttagtgaggaaatatcatgttataatacttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923392 cataacatcctatataaattcaccatccattgtcacaacttatgtacatgaataattagcatattagacttagtgaggaaatatcatgttataatacttt 31923293  T
Q  118 attcatttatataa-aaaacagttgcaaatgtgtgtgtaagtgacagaaaggatagttattactggtagattcaaatgtagctgattcatcaatattaaa 216  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923292 attcatttatataaaaaaacatttgcaaatgtgtgtgtaagtgacagaaaggatagttattactggtagattcaaatgtagctgattcatcaatattaaa 31923193  T
Q  217 attt 220  Q
    ||||    
T  31923192 attt 31923189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 31923123 - 31923064
Alignment:
Q  286 gaaggacatagtttggaataactcactggatacagagaggaagacagaaggaggtgtgtg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31923123 gaaggacatagtttggaataactcactggatacagagaggaagacagaaggaggtgtgtg 31923064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 977 - 1033
Target Start/End: Complemental strand, 31922412 - 31922356
Alignment:
Q  977 gagggaactatgagaatctaaaattcggaagaccatgtttgtccctgtaaaaatcgt 1033  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  31922412 gagggaactatgggaatctaaaattcggaagaccatgtttgttcctgtgaaaatcgt 31922356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1301 - 1330
Target Start/End: Complemental strand, 31921675 - 31921646
Alignment:
Q  1301 tttgtatttaagttatttctatagtcatct 1330  Q
    ||||||||||||||||||||||||||||||    
T  31921675 tttgtatttaagttatttctatagtcatct 31921646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 813 - 883
Target Start/End: Complemental strand, 17109217 - 17109147
Alignment:
Q  813 aatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctc 883  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  17109217 aatcaagagagtaaggaatgcatcaaagagaagctagacatcccaactagattgacaccacatagctgctc 17109147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1138 - 1221
Target Start/End: Original strand, 30709117 - 30709200
Alignment:
Q  1138 ccttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaat 1221  Q
    ||||||||  ||||||||||| |||||||||||||||||  |||| |||||| |||| ||||||||| || |||| ||||||||    
T  30709117 ccttagaccgggttttgtaggaaactcgatagagttgttgtttctacttcttagttatgtagggtgtgaattgttcattagaat 30709200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 810 - 915
Target Start/End: Original strand, 30708685 - 30708791
Alignment:
Q  810 atgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaacta-gattgacaatccatagctgctcccattttctgccatttgctttgaaa 908  Q
    |||||||||||||| || ||||| ||||| |||||| ||||||||||||||| | ||||||  ||||||||| | ||||  ||| |||  |||| |||||    
T  30708685 atgaatcaagagagcaaagaaggtatcaaagagaagttagacatcccaactagggttgacacaccatagctgttgccatcctctaccacctgctctgaaa 30708784  T
Q  909 ttttatt 915  Q
    |||||||    
T  30708785 ttttatt 30708791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 990 - 1031
Target Start/End: Original strand, 17906196 - 17906237
Alignment:
Q  990 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 1031  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17906196 gaatctaaaattcggaagaccatgtttgtccctgtaaaaatc 17906237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 813 - 866
Target Start/End: Original strand, 17905478 - 17905531
Alignment:
Q  813 aatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattg 866  Q
    ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  17905478 aatcaagagagtaaggaaagcataaaggagaagatagacatcccaactagattg 17905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1090 - 1220
Target Start/End: Original strand, 14164480 - 14164611
Alignment:
Q  1090 tctaatattccaatagaagacctttattaaactggaggagtgattgcacc-ttagactaggttttgtaggcaactcgatagagttgtttattctgcttct 1188  Q
    |||||||||||||||||||||||| ||| |    ||||||| |||||||| ||||||  | |||||||||  |||||||| |||| ||| |||||||| |    
T  14164480 tctaatattccaatagaagaccttcattgagaaagaggagtaattgcacctttagaccggattttgtaggacactcgatatagttcttttttctgctttt 14164579  T
Q  1189 tggttaggtagggtgtaaaatgttaattagaa 1220  Q
    | |||||||| |||||||  |||| |||||||    
T  14164580 tagttaggtaaggtgtaagttgttcattagaa 14164611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 810 - 887
Target Start/End: Original strand, 33892515 - 33892592
Alignment:
Q  810 atgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctcccat 887  Q
    |||||||||||||| ||||||  |||||||| |||| ||||||||| ||||||| |||||  | ||| ||||||||||    
T  33892515 atgaatcaagagagtaaggaatacatcaaggggaagttagacatcctaactagactgacacccgataactgctcccat 33892592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 853
Target Start/End: Complemental strand, 32497034 - 32496992
Alignment:
Q  811 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 853  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||    
T  32497034 tgaatcaagagagcaagaaagacatcaaggagaagctagacat 32496992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 810 - 887
Target Start/End: Complemental strand, 30433963 - 30433886
Alignment:
Q  810 atgaatcaagagagaaaggaaggcatcaaggagaagctagacatcccaactagattgacaatccatagctgctcccat 887  Q
    |||||||||||| | ||| ||| ||||||||||||||| |||| ||||||||  ||| ||  |||||| |||||||||    
T  30433963 atgaatcaagagcgcaagaaagacatcaaggagaagctggacaccccaactatgttggcaccccatagttgctcccat 30433886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1124 - 1268
Target Start/End: Complemental strand, 13231925 - 13231778
Alignment:
Q  1124 gaggagtgattgcacc-ttagactaggttttgtaggcaactcgatagagttgtttattctgcttcttggttaggtagggtgtaaaatgttaattagaatc 1222  Q
    ||||||| |||||||| ||| ||  |||||||||||||| || |||||||| ||| |||| |||||| ||||||||| ||  ||| |||| |||||||||    
T  13231925 gaggagtaattgcacccttataccgggttttgtaggcaattcaatagagttcttttttcttcttcttagttaggtagagtaaaaattgttcattagaatc 13231826  T
Q  1223 ctcc--gtccggaaccaaaacgtaccgaatcaaattatgatccttttg 1268  Q
    ||||   |  |||||||||| ||  |||||||| ||| ||||||||||    
T  13231825 ctccttatttggaaccaaaatgtgacgaatcaagttaagatccttttg 13231778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 811 - 853
Target Start/End: Original strand, 28298983 - 28299025
Alignment:
Q  811 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 853  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  28298983 tgaatcaagagagcaaggaaggcatcaaggagaagctacacat 28299025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 811 - 853
Target Start/End: Complemental strand, 28513090 - 28513048
Alignment:
Q  811 tgaatcaagagagaaaggaaggcatcaaggagaagctagacat 853  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  28513090 tgaatcaagagagcaaggaaggcatcaaggagaagctacacat 28513048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1187
Target Start/End: Original strand, 28299206 - 28299311
Alignment:
Q  1083 caaaacctctaatattccaatagaagacctttattaaactggaggagtgattgca-ccttagactaggttttgtaggcaactcgatagagttgtttattc 1181  Q
    |||| ||||||| |||||||||||||||||| ||| |   |||||||| ||| || |||||||  ||||||| |||| |||||||||||||| ||| |||    
T  28299206 caaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactcgatagagttcttttttc 28299305  T
Q  1182 tgcttc 1187  Q
     |||||    
T  28299306 cgcttc 28299311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1187
Target Start/End: Complemental strand, 28512867 - 28512762
Alignment:
Q  1083 caaaacctctaatattccaatagaagacctttattaaactggaggagtgattgca-ccttagactaggttttgtaggcaactcgatagagttgtttattc 1181  Q
    |||| ||||||| |||||||||||||||||| ||| |   |||||||| ||| || |||||||  ||||||| |||| |||||||||||||| ||| |||    
T  28512867 caaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactcgatagagttcttttttc 28512768  T
Q  1182 tgcttc 1187  Q
     |||||    
T  28512767 cgcttc 28512762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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