View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18496_low_7 (Length: 380)

Name: NF18496_low_7
Description: NF18496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18496_low_7
NF18496_low_7
[»] chr3 (3 HSPs)
chr3 (1-365)||(43788966-43789342)
chr3 (256-314)||(20383770-20383828)
chr3 (256-295)||(8560174-8560213)
[»] chr1 (2 HSPs)
chr1 (256-365)||(10778177-10778287)
chr1 (257-294)||(15554744-15554781)
[»] chr5 (3 HSPs)
chr5 (256-333)||(38054015-38054092)
chr5 (256-367)||(29986467-29986580)
chr5 (256-331)||(39797015-39797090)
[»] chr6 (1 HSPs)
chr6 (260-333)||(16125306-16125378)
[»] chr8 (2 HSPs)
chr8 (256-324)||(35470351-35470419)
chr8 (256-365)||(35396284-35396394)
[»] chr7 (3 HSPs)
chr7 (256-352)||(47642009-47642105)
chr7 (256-365)||(7355940-7356051)
chr7 (256-304)||(34535010-34535058)
[»] chr4 (2 HSPs)
chr4 (256-333)||(53436795-53436872)
chr4 (256-327)||(35309647-35309718)
[»] chr2 (1 HSPs)
chr2 (256-311)||(12059813-12059868)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 43789342 - 43788966
Alignment:
Q  1 gagatgttattcccaggccaaacgtcattgaaagataccaccgtctgcgactgcatgcttgtaacggtgggaaagacctcaaacggcatcggtggtaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43789342 gagatgttattcccaggccaaacgtcattgaaagataccaccgtctgcgactgcatgcttgtaactgtgggaaagacctcaaacggcatcggtggtaatg 43789243  T
Q  101 tatttgtcgagaaaaatcccgacgacatcaccagcatgt--taaactccggcaccattacctcaaacggcatctgtggtaatgtatgcgataaatacacc 198  Q
    |||||||||||||||||||||||||||| ||| || |||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43789242 tatttgtcgagaaaaatcccgacgacat-accggcgtgttataaactccggcaccattacctcaaacgtcatctgtggtaatgtatgcgataaatacacc 43789144  T
Q  199 t-gggcatagtctccggcatgtaaaactccgacggcatca---------gcggatcttagtagaaacccatggcatcccctgggttttcaatatatacaa 288  Q
    | ||||||||||||| || |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43789143 tggggcatagtctccagcgtgtaaaactccgacggcatcagcggcagtggcggatcttagtagaaacccatggcatcccctgggctttcaatatatacaa 43789044  T
Q  289 tattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagtcccccagcagtcgcgagt 365  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| | |||||| |||| |||||||||||||||||||    
T  43789043 tattaggcatattatttcagtaacttctcagttgtcgcagcggtaagctagtcttataatcccccagcagtcgcgagt 43788966  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 20383828 - 20383770
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagtt 314  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||| |||||||| |||||    
T  20383828 ccatggcatcccctgggtttttaatatataccatattatgcataatatttcagcaagtt 20383770  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 8560213 - 8560174
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattagg 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  8560213 ccatggcatcccctaggttttcaatatatactatattagg 8560174  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 10778177 - 10778287
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagtcccccag 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||| ||||||||| | |||||| || ||||||||||    
T  10778177 ccatggcatcccctgggttttcaatatataccatattaggcatattattttagtaagtttacagttggcgcagtggtaagctagtcttacagtcccccag 10778276  T
Q  355 cagtcgcgagt 365  Q
      |||||||||    
T  10778277 tggtcgcgagt 10778287  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 15554781 - 15554744
Alignment:
Q  257 catggcatcccctgggttttcaatatatacaatattag 294  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  15554781 catggcatcccctaggttttcaatatataccatattag 15554744  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 38054015 - 38054092
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggta 333  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||  |||||| ||||||||||    
T  38054015 ccatggcatcccttgggttttcaatatataccatattaggcatattattttagtaagtttacagttggcgcagtggta 38054092  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 29986467 - 29986580
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagtccc-cca 353  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| | | |||||||||  || | |||||| ||||||||| |||    
T  29986467 ccatggcatcccctgggttttcaatatataccatattagacatattattttagtaagttttgaattgtcgcagcagtaagctagtcttatagtcccacca 29986566  T
Q  354 gcagtcgcgagtga 367  Q
     | |||||||||||    
T  29986567 acggtcgcgagtga 29986580  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 39797090 - 39797015
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtgg 331  Q
    |||||||||||||||| |||||||||||||| |||||||||||  ||| ||| | |||| ||  ||||||||||||    
T  39797090 ccatggcatcccctggtttttcaatatatactatattaggcatcctatatcaattagttttccattgtcgcagtgg 39797015  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 16125378 - 16125306
Alignment:
Q  260 ggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggta 333  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  16125378 ggcatcccctgggttttcaatatatagcatattaggcataatatttca-taagttttcagttgtcgcagcggta 16125306  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 35470351 - 35470419
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtc 324  Q
    |||||||||||| || ||||||||||||||| |||||| ||||||||||| |||||||| |||||||||    
T  35470351 ccatggcatcccttgagttttcaatatataccatattaagcatattattttagtaagttttcagttgtc 35470419  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 35396284 - 35396394
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagtcccccag 354  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||| |||||  | |||||||| |||| ||| |  ||||| |||||||||||      
T  35396284 ccatggcatcccctgggtttccaatatatatcatattaggcatattattttagtaatgtttcagttgttgcagcggtaagttagtcttatagtcccccca 35396383  T
Q  355 cagtcgcgagt 365  Q
    | |||||||||    
T  35396384 cggtcgcgagt 35396394  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 47642105 - 47642009
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagtccccc 352  Q
    |||||||||||| || ||||||||||||||| ||| ||||||||||||||  ||||||| ||||||||||||  ||| | |||||| |||||||||||    
T  47642105 ccatggcatccc-tgtgttttcaatatataccatactaggcatattattttggtaagttttcagttgtcgcatcggtaagctagtcttatagtccccc 47642009  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 7355940 - 7356051
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggt-atctagtcctatagt-ccccca 353  Q
    ||||||||||||||||||||| || |||||| |||||| ||||| |||||||| ||||| ||| | ||||||| ||| | |||||| ||| || ||||||    
T  7355940 ccatggcatcccctgggtttttaacatataccatattatgcataatatttcagcaagttttcattcgtcgcagcggtaagctagtcgtatggtcccccca 7356039  T
Q  354 gcagtcgcgagt 365  Q
    || |||||||||    
T  7356040 gcggtcgcgagt 7356051  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 34535010 - 34535058
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatt 304  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||| ||||    
T  34535010 ccatggcatcccctgggtttttaatatataccatattatgcataatatt 34535058  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 53436872 - 53436795
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgcagtggta 333  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||| |||||||| ||||| ||| | ||||||| ||||    
T  53436872 ccatggcatcccctgggtttttaatatataccatattatgcataatatttcagcaagttttcattcgtcgcagcggta 53436795  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 35309718 - 35309647
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaagttctcagttgtcgca 327  Q
    |||||||||||| |||||||||||||||||  ||||||   || |||||| |||||||| ||||||||||||    
T  35309718 ccatggcatcccttgggttttcaatatatatcatattaaatatgttattttagtaagttttcagttgtcgca 35309647  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 12059813 - 12059868
Alignment:
Q  256 ccatggcatcccctgggttttcaatatatacaatattaggcatattatttcagtaa 311  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||| |||||    
T  12059813 ccatggcatcccctgggtttccaatatatatcatattaggcatattattttagtaa 12059868  T

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