View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_high_1 (Length: 775)
Name: NF18498_high_1
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 390 - 760
Target Start/End: Original strand, 49255932 - 49256302
Alignment:
| Q |
390 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
489 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
490 |
taactttccctagtgtttagttttacgcatagttgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaatattgattccattcttat |
589 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaatactgattccattcttat |
49256131 |
T |
|
| Q |
590 |
aaattagtgttgnnnnnnnnnnnccatgaccagtttgtcaatcatctcaacactatatacaataccagaagcaactggctcagcagcaaggttttgattc |
689 |
Q |
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| T |
49256132 |
aaattagttttttttttttttttccatgaccagtttgtcaatcatctcaacactctatacaataccagaagcaactggctcagcagcaaggttttgattc |
49256231 |
T |
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| Q |
690 |
acatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaaagtgatgctatttctt |
760 |
Q |
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| T |
49256232 |
acatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaaagtgatgctatttctt |
49256302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 49254615 - 49254965
Alignment:
| Q |
18 |
tgtgaactgaacattgtttattccaatttcaataataatctcaacttccaccaacgtattcaaatcccaatattaatgta-------------ttcaatt |
104 |
Q |
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| T |
49254615 |
tgtgaactgaacattgtttattccaatttcaataataatctcaacttccaccaacgtattcaaatcc-aatattaatgtaactttgtcacatattcaatt |
49254713 |
T |
|
| Q |
105 |
ttctgggctagaaaatatggataaaggtttgttagagaaagacacagagggtg---gttcaagaagcataacatggcgtgtattttttcaagaggtgaaa |
201 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49254714 |
ttctgggctagaaaatatggaaaaaggtttgttagagaaagacagagagggtgctggttcaagaagcataacatggggtgtattttttcaagaggtgaaa |
49254813 |
T |
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| Q |
202 |
gatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaacttt |
301 |
Q |
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| T |
49254814 |
gatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaacttt |
49254913 |
T |
|
| Q |
302 |
ctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
353 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49254914 |
ctctttctagcacagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 111 - 353
Target Start/End: Original strand, 49266985 - 49267227
Alignment:
| Q |
111 |
gctagaaaatatggataaaggtttgttagagaaagacacagagggtggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgt |
210 |
Q |
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||||||||||||||| || ||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49266985 |
gctagaaaatatggaaaagggtttgttagagaaagacagagaaggtgattcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgt |
49267084 |
T |
|
| Q |
211 |
tttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttcta |
310 |
Q |
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| T |
49267085 |
tttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgataatggttggtcgtttgggtaaacttgctctttcta |
49267184 |
T |
|
| Q |
311 |
gcacagctattgctatctctctttgtgctgtctctggcttcag |
353 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49267185 |
gcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 203 - 383
Target Start/End: Complemental strand, 49274761 - 49274577
Alignment:
| Q |
203 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttc |
302 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
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| Q |
303 |
tctttctagcacagctat----tgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
383 |
Q |
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| T |
49274661 |
tctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
49274577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 167 - 353
Target Start/End: Original strand, 49271447 - 49271633
Alignment:
| Q |
167 |
gcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
266 |
Q |
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||||| ||||| |||| ||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
|
| Q |
267 |
ttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
353 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
49271547 |
ttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 394 - 492
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
394 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggtataa |
492 |
Q |
| |
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||||||| ||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 620 - 693
Target Start/End: Original strand, 49269145 - 49269218
Alignment:
| Q |
620 |
cagtttgtcaatcatctcaacactatatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
693 |
Q |
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| T |
49269145 |
cagtttatcaatcatctcaacaatctatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
49269218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 427
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
393 |
atttcagctttgagtggtggtcatttgagctccta |
427 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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