View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18498_high_10 (Length: 276)

Name: NF18498_high_10
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18498_high_10
NF18498_high_10
[»] chr7 (2 HSPs)
chr7 (77-266)||(3626795-3626984)
chr7 (78-145)||(24857329-24857396)
[»] chr2 (4 HSPs)
chr2 (78-266)||(21466414-21466602)
chr2 (78-266)||(33224131-33224319)
chr2 (188-266)||(26648148-26648226)
chr2 (77-124)||(8078495-8078542)
[»] chr6 (4 HSPs)
chr6 (75-266)||(8370986-8371177)
chr6 (80-266)||(513860-514046)
chr6 (77-266)||(34845192-34845381)
chr6 (78-266)||(15137045-15137235)
[»] chr5 (1 HSPs)
chr5 (86-266)||(39174982-39175162)
[»] chr4 (4 HSPs)
chr4 (107-266)||(34132057-34132216)
chr4 (105-266)||(53911844-53912005)
chr4 (79-266)||(29582394-29582585)
chr4 (98-187)||(21181493-21181582)
[»] chr3 (4 HSPs)
chr3 (191-266)||(35204418-35204493)
chr3 (70-187)||(35204474-35204581)
chr3 (78-130)||(17711928-17711980)
chr3 (78-130)||(19013185-19013237)
[»] chr8 (1 HSPs)
chr8 (78-113)||(28524402-28524437)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 3626984 - 3626795
Alignment:
Q  77 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 176  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3626984 gcagtggtggtgccacatataagtgaggggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcc 3626885  T
Q  177 tgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3626884 tgatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 3626795  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 24857396 - 24857329
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatg 145  Q
    ||||||||| |||||||| ||||||| |||||||  |||||||||||   ||| ||||||||||||||    
T  24857396 cagtggcggagccacatacaagtgaggggatgcagatgcatcccctggattttcaaaatttgcacatg 24857329  T

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Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 21466414 - 21466602
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcct 177  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21466414 cagtggcggtgccacatataagtgaggggatgcacttgcatcccctgatcttttaaaatttgcacatgattgcagtgttttattagtgcttgaacctcct 21466513  T
Q  178 gatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21466514 gatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 21466602  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 33224131 - 33224319
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcct 177  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33224131 cagtggtggtgccacatataagtgaggggatgcacttgcatcccctggacttttaaaatttccacatgattgcactgttttattagtgtttgaacctcct 33224230  T
Q  178 gatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  33224231 gatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacatattgcaccaataatccaagtttctctcaccctatg 33224319  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 26648226 - 26648148
Alignment:
Q  188 ggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26648226 ggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 26648148  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 8078542 - 8078495
Alignment:
Q  77 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctg 124  Q
    ||||||||||||||||||| ||||||| |||||||  |||||||||||    
T  8078542 gcagtggcggtgccacatacaagtgaggggatgcagatgcatcccctg 8078495  T

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Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 8371177 - 8370986
Alignment:
Q  75 aagcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacct 174  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8371177 aagcagtggcggtgccacatataagtgaggggatgcacttgcatctcctgagcttttaaaatttgcacatgattgtactgttttattagtgcttgaacct 8371078  T
Q  175 cctgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8371077 cctgatattttaagaatgaacctcctcatatcttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcagcctatg 8370986  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 514046 - 513860
Alignment:
Q  80 gtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctga 179  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  514046 gtggcggtgccacatataagtgaggggatgcacttgcatcccttgggcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctga 513947  T
Q  180 tattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  513946 tattttaaggatgaatctcctcatattttaacattgcaattgagccaaacattttgcaccaataatccaagtttctctcaccctatg 513860  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 34845381 - 34845192
Alignment:
Q  77 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34845381 gcagtggcggtgccacatataagtgaggggatgcacttgcatttcctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcc 34845282  T
Q  177 tgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  34845281 tgatattttaaggaagaatctcctcatattttaacattgcaattgagccaaacattttacaccaataacccaagtttctctcaccctatg 34845192  T

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Target: chr6; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 15137045 - 15137235
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcac--ttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctc 175  Q
    |||||||||||||||||||||||||| ||||||||  |||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15137045 cagtggcggtgccacatataagtgaggggatgcacacttgcatcctctgggcttttaaaatttgcacatgattgtactgttttattagtgcttgaacctc 15137144  T
Q  176 ctgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15137145 ctgatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 15137235  T

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Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 39174982 - 39175162
Alignment:
Q  86 gtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatatttt 185  Q
    |||||||||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  39174982 gtgccacatataagtgaggggatgcacttgcattccctggacttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatatttt 39175081  T
Q  186 aaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39175082 aaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 39175162  T

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Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 34132057 - 34132216
Alignment:
Q  107 atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaaggatgaacctcctcatatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  34132057 atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggatgaaccttctcatatt 34132156  T
Q  207 ttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34132157 ttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatg 34132216  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 105 - 266
Target Start/End: Original strand, 53911844 - 53912005
Alignment:
Q  105 ggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaaggatgaacctcctcata 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  53911844 ggatgcacttgcatcccctgggcttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatattttaaggatgaacctcctcata 53911943  T
Q  205 ttttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  53911944 ttttaacattgcaattgagccaaacattttgcaccaataatccaagtttctctcaccctatg 53912005  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 29582585 - 29582394
Alignment:
Q  79 agtggcggtgccacatataagtgagaggat--gcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 176  Q
    |||||||| ||||| ||||| |||||| ||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |  ||||| |||     
T  29582585 agtggcggagccacgtataaatgagagaatatgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctca 29582486  T
Q  177 tgatattttaaggatgaacctcct--catattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||| ||||||||   |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  29582485 tgatattttaaggatcaacctcctgatatattttaacattgcacttgagccaaacattttgcaccaataacccaagtttccctcaccctatg 29582394  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 21181582 - 21181493
Alignment:
Q  98 agtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaa 187  Q
    |||||| |||||||  |||||||||||  |||||||| |||||||||||| ||||||||||  |  |  |||||||| ||||||||||||    
T  21181582 agtgaggggatgcagctgcatcccctggacttttaaattttgcacatgatggcactgttttcatgctacttgaacctactgatattttaa 21181493  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 35204493 - 35204418
Alignment:
Q  191 tgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204493 tgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatg 35204418  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 35204581 - 35204474
Alignment:
Q  70 gatctaagcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttg 169  Q
    |||||||||||||||||||||||||||||||||| |||||||  |           |||||||||||||||||||||||||||||||||||||||| |||    
T  35204581 gatctaagcagtggcggtgccacatataagtgaggggatgcaagtt----------gcttttaaaatttgcacatgattgcactgttttattagtgcttg 35204492  T
Q  170 aacctcctgatattttaa 187  Q
    |||||||| |||||||||    
T  35204491 aacctcctcatattttaa 35204474  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 17711928 - 17711980
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttt 130  Q
    ||||||||| ||||| ||  | |||||||||||||||||||||||||| ||||    
T  17711928 cagtggcggagccacgtaccattgagaggatgcacttgcatcccctgaccttt 17711980  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 19013185 - 19013237
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttt 130  Q
    ||||||||| ||||| ||  | |||||||||||||||||||||||||| ||||    
T  19013185 cagtggcggagccacgtaccattgagaggatgcacttgcatcccctgaccttt 19013237  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 28524437 - 28524402
Alignment:
Q  78 cagtggcggtgccacatataagtgagaggatgcact 113  Q
    |||||||||||||||||||||||||| |||||||||    
T  28524437 cagtggcggtgccacatataagtgaggggatgcact 28524402  T

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