View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_high_13 (Length: 237)
Name: NF18498_high_13
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23991110 - 23991329
Alignment:
| Q |
18 |
gaatatgcttgaagaattttgtgtttgtttttaagtgataatttcactagaggattt-aaatattttgtttgcatttcagttgaagaagagccaccagca |
116 |
Q |
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| T |
23991110 |
gaatatgcttgaagaattttgtgtttgtttttaagtgataatttcaccagaagattttaaatatttcgtttgcatttcagttgaagaagagccagcagca |
23991209 |
T |
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| Q |
117 |
aaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttccaaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23991210 |
aaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccgtcgacacaattagttgaacaagcttccactccagttccaaaga |
23991309 |
T |
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| Q |
217 |
agcaacatactgaaaataac |
236 |
Q |
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||||||||||||| |||||| |
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| T |
23991310 |
agcaacatactgataataac |
23991329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 23984449 - 23984665
Alignment:
| Q |
19 |
aatatgcttgaagaattttgtgtttgtttttaagtgataatttcactagaggatttaaatattttgtttgcatttcagttgaagaagagccaccagcaaa |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
23984449 |
aatatgcttgaagaattt-gtgtttgtttttaagtgaaaatttcactagaggatttaaatattttgtttgcatttcagttgaagaagagcgagcagcaaa |
23984547 |
T |
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| Q |
119 |
ggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttccaaagaag |
218 |
Q |
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| T |
23984548 |
ggctccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccgtcgacacaatcagttgaacaagcttccactccagttccaaagaag |
23984647 |
T |
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| Q |
219 |
caacatactgaaaataac |
236 |
Q |
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|||||||||||||||||| |
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| T |
23984648 |
caacatactgaaaataac |
23984665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 23967516 - 23967736
Alignment:
| Q |
18 |
gaatatgcttgaagaatttt--gtgtttgtttttaagtgataatttcactagaggatttaaa-tattttgtttgcatttcagttgaagaagagccaccag |
114 |
Q |
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||||||||||||||||||| ||||||||||| |||||| |||||| ||| | |||| | |||||||||||||||||||||||||||||||||||| |
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| T |
23967516 |
gaatatgcttgaagaatttcacgtgtttgttttcaagtgaatatttcattagtgaattttgactattttgtttgcatttcagttgaagaagagccaccaa |
23967615 |
T |
|
| Q |
115 |
caaaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttccaaa |
214 |
Q |
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| T |
23967616 |
ctaaggttcccaaactaattccgtttagtggttctggaaggcgtttggatggtaaaccgtcggcacaatcaatcgaacaaacttctactccaattataaa |
23967715 |
T |
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| Q |
215 |
gaagcaacatactgaaaataa |
235 |
Q |
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| ||||||| ||||||||||| |
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| T |
23967716 |
gcagcaacaaactgaaaataa |
23967736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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