View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_high_5 (Length: 474)
Name: NF18498_high_5
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 49 - 460
Target Start/End: Original strand, 34067920 - 34068329
Alignment:
| Q |
49 |
aatttgatgtcataaaatcactaatcaactgattaattttgagattaacatcgaaatagtaagttttttaacaacaaatactaccccaccccatccattc |
148 |
Q |
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| T |
34067920 |
aatttgatgtcataaaatcactaatcaactgattaattttgagattaacatcgaaatagtaagttttttaacaacaaatactaccccaccccatccattc |
34068019 |
T |
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| Q |
149 |
aaaagggtatacgttaatcattttacaatattggcagtaatgagtgtgagacaggtatcaatatctattgaaggtcaacttcaagtttacactattaggt |
248 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34068020 |
aaaagggtatacattaatcattttacaatattggcagtaatgagtgtgagacaggtatca--atctattgaaggtcaacttcaagtttacactattaggt |
34068117 |
T |
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| Q |
249 |
caatttcctttcacattcaagatctagagaacaaaagataccttatatacaaagtcctttagaaaaattcctagcatccaaccacnnnnnnnncaagagc |
348 |
Q |
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| T |
34068118 |
caatttcctttcacattcaagatctagagaacaaaagataccttatatacaaagtcctttagaaaaattcctagcatccaaccacaaaaaaaacaagagc |
34068217 |
T |
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| Q |
349 |
atctttcacgtgatgacaagctcacattcatgggttaatggcttttgtgtcagccattccctcctcctcttcatgaaagcatctatttgtccccaatcca |
448 |
Q |
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| T |
34068218 |
atctttcacgtgatgacaagctcacattcatgggttaatggcttttgtgtcagccattccctcctcctcttcatgaaagcatctatttgtccccaatcca |
34068317 |
T |
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| Q |
449 |
tgtgataataat |
460 |
Q |
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| T |
34068318 |
tgtgataataat |
34068329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 34067849 - 34067882
Alignment:
| Q |
19 |
tttctaatgccatcaatcaacaatatgcttaatt |
52 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
34067849 |
tttctcatgccatcaatcaacaatatgcttaatt |
34067882 |
T |
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