View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_high_7 (Length: 436)
Name: NF18498_high_7
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 43474571 - 43474978
Alignment:
| Q |
14 |
aggtatatattatcaccaaattattgaattatgttccatgttgtgctttgagtttttatatacnnnnnnnnagctatgaaccactgacacggacacacaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
43474571 |
aggtatatattatcaccaaattattgaattatgttccatgttgtgctttgagtttttatatgcttttttttagttatgaaccactgacacggacacacaa |
43474670 |
T |
|
| Q |
114 |
acacggtagtaacactgacacatcatcactagtaataattgaatgtaactgcacgttggtgtcggaccctaacatatatcggacacgatctgaattcttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474671 |
acacggtagtaacactgacacatcatcactagtaataattgaatgtaactgcacgttggtgtcggaccctaacatatatcggacacgatctgaattcttg |
43474770 |
T |
|
| Q |
214 |
atacaaaggtttttagcttattctctatatttttgttctcaggaaaaccaagagaaagagatcaagcaattgaggaagagcttgactttcaaagccgctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474771 |
atacaaaggtttttagcttattctctatatttttgttctcaggaaaaccaagagaaagagatcaagcaattgaggaagagcttgactttcaaagccgctc |
43474870 |
T |
|
| Q |
314 |
caatgccaagtttctataaggaaccacctccaaaagttgagctaaagaaggtaactaattcatcacatgtcctcttagccggtgctgactttaaattgat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474871 |
caatgccaagtttctataaggaaccacctccaaaagttgagctaaagaaggtaactaattcatcacatgtcctcttagccggtgctgactttaaattgat |
43474970 |
T |
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| Q |
414 |
gtcataaa |
421 |
Q |
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| T |
43474971 |
gtcataaa |
43474978 |
T |
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Back To:
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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 369
Target Start/End: Complemental strand, 24261707 - 24261591
Alignment:
| Q |
253 |
caggaaaaccaagagaaagagatcaagcaattgaggaagagcttgactttcaaagccgctccaatgccaagtttctataaggaaccacctccaaaagttg |
352 |
Q |
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||||||| ||||||| |||||||||| |||| || ||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24261707 |
caggaaagccaagaggcagagatcaagaaattaagaaagagaatgacattcaaagcagctccaatgccaagtttctataaggaacctcctccaaaagttg |
24261608 |
T |
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| Q |
353 |
agctaaagaaggtaact |
369 |
Q |
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|||| || ||||||||| |
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| T |
24261607 |
agctgaaaaaggtaact |
24261591 |
T |
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