View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_high_8 (Length: 426)
Name: NF18498_high_8
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 51828487 - 51828882
Alignment:
| Q |
14 |
agatgaaccaggtgatgaccctgtagattgaaaagaaaaagaaaacttaaataaataacccagttgttgtaacggaatggagaaaaataa-ggaaaatat |
112 |
Q |
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| T |
51828487 |
agatgaaccaggtgatgaccctgtagattgaaaagaaaaagaaaacttaaataaataacccagttgttgtaaccgaatgaagaaaaataagggaaaatat |
51828586 |
T |
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| Q |
113 |
ctgaaatgacattatactctgtttttgaccaagttcatttaatg-aaagactatttgagacttagtttgattcaacattctaaatcccaaaattttagga |
211 |
Q |
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| T |
51828587 |
ctgaaatgacattatactctgtttttgaccaagttcatttaatgaaaagactatttgagacttagtttgattcaacattctaaatcccaaaattttagga |
51828686 |
T |
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| Q |
212 |
actgaattgaaaataataataataatattattatttttaccatttgtttcaggagtgtgaaggttaaagccttcgaaactacccttcttctccttgaggt |
311 |
Q |
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| T |
51828687 |
actgaattgaa------aataataatattattttttttaccatttgtttcaggagtgtgaaggttaaagccttcgaaactacccttcttctccttgaggt |
51828780 |
T |
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| Q |
312 |
attgcctcaatagattacaagtttgagaaaacgtaggtttctccgatgattttgtcagtttgttgccggataaaccagaaatgtccgatgaagtcgacat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51828781 |
attgcctcaatagattacaagtttgagaaaacgtaggtttctccgatgattttgtcagtttgttgccggataaaccagaaatgtccgatgaagtcgacat |
51828880 |
T |
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