View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_low_14 (Length: 235)
Name: NF18498_low_14
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 7569074 - 7568872
Alignment:
| Q |
15 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
114 |
Q |
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| T |
7569074 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
7568975 |
T |
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| Q |
115 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattatcaatcaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7568974 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattattaatcaagaa |
7568875 |
T |
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| Q |
215 |
tat |
217 |
Q |
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||| |
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| T |
7568874 |
tat |
7568872 |
T |
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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 33126271 - 33126392
Alignment:
| Q |
15 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
114 |
Q |
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|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||| |||| |
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| T |
33126271 |
agcataggctggaagagcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctg |
33126370 |
T |
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| Q |
115 |
cacccataatcatacctgcaat |
136 |
Q |
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| T |
33126371 |
ctcctgtaatcatacctgcaat |
33126392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 50748539 - 50748443
Alignment:
| Q |
36 |
gccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctg |
132 |
Q |
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||||||||||| || |||| ||||||||| | ||| || | ||| ||||| | |||||||| |||||||| | ||||||||||| |||||||||| |
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| T |
50748539 |
gccaaatcatagtcaataattggcatgtccaatgtaggatgtctcagcctaaggttgtagtagacagttgacagagctgcacccatgatcatacctg |
50748443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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