View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_low_15 (Length: 204)
Name: NF18498_low_15
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 42413077 - 42412909
Alignment:
| Q |
18 |
actgaagtgtttttgttattatcgacataacttctactgaagtgttgtgcactacaagtatggttatttattggtgtcttctcttatcttctcttgagtt |
117 |
Q |
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| T |
42413077 |
actgaagtgtttttgttattatcgacataacttctactgaagtgttgtgcactacaagtatggttatttattggtgtcttctcttatcttctcttgagtt |
42412978 |
T |
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| Q |
118 |
ggcttaacatttgctacttgtcctttacctctaaaaatggtaataattgtggctattagctatgttaca |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42412977 |
ggcttaacatttgctacttgtcctttacctctaaaaatggtaataattgtggctattagctatgttaca |
42412909 |
T |
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