View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18498_low_2 (Length: 645)
Name: NF18498_low_2
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_low_2 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0006 (9 HSPs) |
| | |
|
| [»] scaffold0069 (4 HSPs) |
| | |
|
| [»] scaffold0068 (2 HSPs) |
| | |
|
| [»] scaffold0460 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Complemental strand, 121262 - 120639
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||| ||| ||||||||||| || |||| || |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
121262 |
gaaccaactttatcagactggaacatcggtaaacatcaattctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatcgaag |
121163 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
217 |
Q |
| |
|
||| ||| | |||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
121162 |
cttagccaggtaccataatttcaactctctgatcgc-gggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
121064 |
T |
|
| Q |
218 |
ttttgaaacaatcaagttgtgctaagtagaatattatcaca--aaattatcaatgaataacacttaaccaacgtaatagacaagcttttgaaaaatatta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
121063 |
ttttgaaacaatcaagttgtgctaagtagaatattatcacataaaattatcaatgaagaacacttaaccaacgtaatagacaagcttttgaaaaatatta |
120964 |
T |
|
| Q |
316 |
tatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat----- |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120963 |
tatttgacactactcttacctcttcaatcacaaaaagagcttgatatgtagagatattgtgctcaacatttttggaactttcttggtgtttcaatggctc |
120864 |
T |
|
| Q |
411 |
-------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttg |
503 |
Q |
| |
|
|||| |||||| ||||||||| | |||| || || | |||||||||||| |||||||||||||| |||||||||||||||||||||| | || |
|
|
| T |
120863 |
tgccttaaataactctattcttggacatttaaacaaattaatttctttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttaagtctg |
120764 |
T |
|
| Q |
504 |
gtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagt |
603 |
Q |
| |
|
||||| | | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
120763 |
gtcaaattataaagttcaatggaagttcaatgaggaaacacaaatttaactatctcatctgttccttcttcctttgcaacaatttcttcaatcccacagt |
120664 |
T |
|
| Q |
604 |
tacttattcgaagactttgaagttg |
628 |
Q |
| |
|
|||||| |||| ||||||||||| |
|
|
| T |
120663 |
tacttacatgaagtctttgaagttg |
120639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 21817577 - 21816947
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || ||||||| ||| ||||||||||| || |||| || |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
21817577 |
gaaccaactttatcagactggaacattggtaaacatcaattctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatcgaag |
21817478 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
217 |
Q |
| |
|
||| ||| | |||||||| ||||||||| || | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21817477 |
cttagccaggtaccataatttcaactctctaagtcgcgggctaatttgagttgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
21817378 |
T |
|
| Q |
218 |
ttttgaaacaatcaagttgtgctaagtagaatattatcac--aaaattatcaatgaataacacttaaccaacgtaatagacaagcttttgaaaaatatta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| | |
|
|
| T |
21817377 |
ttttgaaacaatcaagttgtgctaagtagaatattagcacataaaattatcaatgaataacactcaatcaacgtaatagacaagcttttgaaaaatatga |
21817278 |
T |
|
| Q |
316 |
tatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa------ |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |||| |||| |
|
|
| T |
21817277 |
tatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgagcacatcatttctggaactttctttgtgtctcaaagactc |
21817178 |
T |
|
| Q |
410 |
------taatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttg |
503 |
Q |
| |
|
|||||| |||| ||||||||| | |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21817177 |
tgccttaaatagcactatttttggacatcgaaacaagttgattgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttg |
21817078 |
T |
|
| Q |
504 |
gtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagt |
603 |
Q |
| |
|
||||| | | |||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| | |
|
|
| T |
21817077 |
gtcaaatcataaagtttaatggatgttaaatgaagaaacacaaatttaaccatctcatctggtccttcttccttggccacaatttcttcaatcccacatt |
21816978 |
T |
|
| Q |
604 |
tacttattcgaagactttgaagttgtttcat |
634 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| |
|
|
| T |
21816977 |
tacttacttgaagactttgaagttgcttcat |
21816947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 330 - 624
Target Start/End: Original strand, 22273407 - 22273713
Alignment:
| Q |
330 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||| ||||||||| || |||| |
|
|
| T |
22273407 |
cttacctcttcaatcacaaaaagaggttgatattttgaaatattgagctcatcatttctaatgctttcttcgtgtttcaaaggttctgccttaaaaagct |
22273506 |
T |
|
| Q |
418 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
517 |
Q |
| |
|
|||||||||||||| || | | | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || | ||| |
|
|
| T |
22273507 |
ctatatttggacatgcaaagagatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaataattaag |
22273606 |
T |
|
| Q |
518 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
617 |
Q |
| |
|
| | ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | || || || ||||||| ||||||| |
|
|
| T |
22273607 |
tgtgatggatgttaaatgaggaaacacaaatttaactatctcatctgttccatcttccttggcaacaatttcttggatgccgcatttacttactcgaaga |
22273706 |
T |
|
| Q |
618 |
ctttgaa |
624 |
Q |
| |
|
||||||| |
|
|
| T |
22273707 |
ctttgaa |
22273713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 22272943 - 22273092
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
22272943 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactggatccatttgaaatccttctttgcatatacattgaag |
22273042 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgag |
167 |
Q |
| |
|
|||| ||| |||| ||||| ||||| | |||| | |||||||| ||||| |
|
|
| T |
22273043 |
cttgctcaggtgccgtaatttcaactgtttgagtcgcgggctaatttgag |
22273092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 317; Significance: 1e-178; HSPs: 9)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 211227 - 210835
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
211227 |
gaaccaactttatcagactggaacactcgtaaacatcaatgcgttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaag |
211128 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
217 |
Q |
| |
|
|||| |||||| |||||| ||||||||||| || | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
211127 |
cttgggcagctcccataagtccaactctcttagtcgcggactaaattgaggtgcactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
211028 |
T |
|
| Q |
218 |
ttttgaaacaatcaagttgtgctaagtagaatattatcacaaaattatcaatgaataacacttaaccaacgtaatagacaagcttttgaaaaatattata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
211027 |
ttttgaaacaatcaagttgtgctaagtagaatattatcacaaaattatcaatgaataacacttaaccaacgtaatagacaagcttttgaaaaatattata |
210928 |
T |
|
| Q |
318 |
tttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
210927 |
tttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat |
210835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 175356 - 175041
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
175356 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
175257 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
175256 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
175157 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
175156 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
175057 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
175056 |
gaagactttgaagttg |
175041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 190764 - 190449
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
190764 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
190665 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
190664 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
190565 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
190564 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
190465 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
190464 |
gaagactttgaagttg |
190449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 281 - 561
Target Start/End: Complemental strand, 3942 - 3650
Alignment:
| Q |
281 |
aaccaacgtaatagacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctca |
380 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || |
|
|
| T |
3942 |
aaccaacgtaatagacaagcttttgtaaaatatgacatttgacactactcttacctcttcaatcacaaaaagaggttgatacgttgagatattaagcaca |
3843 |
T |
|
| Q |
381 |
acatttttggaactttcttggtgtttcaat------------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaa |
468 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
3842 |
tcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaa |
3743 |
T |
|
| Q |
469 |
gagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3742 |
gagaatgaaccccaacaaagaatgccttaagtttggtcaagtacttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
3650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 4176 - 3957
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || ||||||| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4176 |
gaaccaactttatcagactggaacattggtaaacatcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatttaag |
4077 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
217 |
Q |
| |
|
|||| |||| | |||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4076 |
cttgggcaggtcccataagtccaactctctgagccccggggtaaattgagttgtactctttacacttgtaagtacctcctgcaagtagaatattatcagc |
3977 |
T |
|
| Q |
218 |
ttttgaaacaatcaagttgt |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3976 |
ttttgaaacaatcaagttgt |
3957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 336 - 628
Target Start/End: Complemental strand, 114172 - 113868
Alignment:
| Q |
336 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
423 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
114172 |
tcttcattcacaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctgccttaaatagctctattt |
114073 |
T |
|
| Q |
424 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaat |
523 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| | | ||||||||| |
|
|
| T |
114072 |
ttggacatccaaacaaattaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaattattaagtttaat |
113973 |
T |
|
| Q |
524 |
ggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttga |
623 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||| ||| | ||||||||||| |
|
|
| T |
113972 |
gaatgtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttggcaacaatttcttgaatcccacatttaattacttgaagactttga |
113873 |
T |
|
| Q |
624 |
agttg |
628 |
Q |
| |
|
||||| |
|
|
| T |
113872 |
agttg |
113868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 175739 - 175568
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||| ||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
175739 |
gaaccaactttatcagactggaacattggcaaacatcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaag |
175640 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaa |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
175639 |
cttgtgcagctgcaataattccaactctctg------------aattgaggtgtactctccacacttgtaagtagctcctgcaa |
175568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 191147 - 190976
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||| ||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
191147 |
gaaccaactttatcagactggaacattggcaaacatcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaag |
191048 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaa |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
191047 |
cttgtgcagctgcaataattccaactctctg------------aattgaggtgtactctccacacttgtaagtagctcctgcaa |
190976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 628
Target Start/End: Complemental strand, 210831 - 210773
Alignment:
| Q |
570 |
tcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
210831 |
tcttcctttgcaacaatttcttcaatcccacagttacttacatgaagactttgaagttg |
210773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 26)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 281 - 628
Target Start/End: Complemental strand, 13596657 - 13596298
Alignment:
| Q |
281 |
aaccaacgtaatagacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctca |
380 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || |
|
|
| T |
13596657 |
aaccaacgtaatagacaagcttttgtaaaatatgacatttgacactactcttacctcttcaatcacaaaaagaggttgatacgttgagatattaagcaca |
13596558 |
T |
|
| Q |
381 |
acatttttggaactttcttggtgtttcaat------------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaa |
468 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
13596557 |
tcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaa |
13596458 |
T |
|
| Q |
469 |
gagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttcc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596457 |
gagaatgaaccccaacaaagaatgccttaagtttggtcaagtacttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttcc |
13596358 |
T |
|
| Q |
569 |
ttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
13596357 |
ttcttccttgacaacaatttcatcaatcccacagttacttacttgaagactttgaagttg |
13596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 13677774 - 13677459
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
13677774 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
13677675 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
13677674 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
13677575 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13677574 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
13677475 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13677474 |
gaagactttgaagttg |
13677459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 13552878 - 13552563
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
|
|
| T |
13552878 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattgtgctcaacatttctggaactctcttggtgtctcaaaggctctgccttaaa |
13552779 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13552778 |
tagctctatttttggacatcgaaacaagttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtac |
13552679 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||| | ||||||||| | ||||| | |
|
|
| T |
13552678 |
ttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgtttcttcttccttggccacaatttcttgaatcccacactgacttactt |
13552579 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13552578 |
gaagactttgaagttg |
13552563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 13596891 - 13596672
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || ||||||| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
13596891 |
gaaccaactttatcagactggaacattggtaaacatcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatttaag |
13596792 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagtagaatattatcagc |
217 |
Q |
| |
|
|||| |||| | |||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596791 |
cttgggcaggtcccataagtccaactctctgagccccggggtaaattgagttgtactctttacacttgtaagtacctcctgcaagtagaatattatcagc |
13596692 |
T |
|
| Q |
218 |
ttttgaaacaatcaagttgt |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13596691 |
ttttgaaacaatcaagttgt |
13596672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 315 - 628
Target Start/End: Complemental strand, 20378076 - 20377751
Alignment:
| Q |
315 |
atatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---- |
410 |
Q |
| |
|
|||||| || |||| ||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
20378076 |
atatttaacgctacacttacctcttcaatctcaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtct |
20377977 |
T |
|
| Q |
411 |
--------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaattt |
502 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
20377976 |
ctgccttaaatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagttt |
20377877 |
T |
|
| Q |
503 |
ggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacag |
602 |
Q |
| |
|
|||||| || | |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| |
|
|
| T |
20377876 |
ggtcaaataatgaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacat |
20377777 |
T |
|
| Q |
603 |
ttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
||| ||| | ||||| |||||||||| |
|
|
| T |
20377776 |
ttaattacttgaagattttgaagttg |
20377751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 330 - 628
Target Start/End: Original strand, 19189190 - 19189500
Alignment:
| Q |
330 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| || || ||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
19189190 |
cttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcatttctggaactttcatggtgtctcaaagcctctgacttaaatagct |
19189289 |
T |
|
| Q |
418 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
517 |
Q |
| |
|
|||| ||||||||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | |||||| |
|
|
| T |
19189290 |
ctatttttggacattcgaacaaatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgttcaag |
19189389 |
T |
|
| Q |
518 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
617 |
Q |
| |
|
| ||||||| || || || ||||||| ||||||||||||||||||| ||||||||||||| |||||||||| | || ||||| ||||||| ||||||| |
|
|
| T |
19189390 |
tataatggatgttaactgtggaaacaataatttaaccatctcatctggtccttcttccttggcaacaatttcttggatgccacatttacttactcgaaga |
19189489 |
T |
|
| Q |
618 |
ctttgaagttg |
628 |
Q |
| |
|
||||||||||| |
|
|
| T |
19189490 |
ctttgaagttg |
19189500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 15895341 - 15895524
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15895341 |
gaaccaactttatcagactggaacactggtaaacatcaatgctttcaataaaatgtagaaaaggatccatttgaaatccttctttacatatatatttaag |
15895440 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaa |
201 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| |||| | |||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15895441 |
cttgtgcaactgccataatttcaattctttgagtcgcgggctaaatcgaggtgtactctccacacttgtaagtacctcctgcaa |
15895524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 336 - 628
Target Start/End: Original strand, 20510532 - 20510836
Alignment:
| Q |
336 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
423 |
Q |
| |
|
|||||| |||||||||| | || |||||| ||||||||| || || ||||| ||||||||||||||||| |||| ||||||| ||| | |
|
|
| T |
20510532 |
tcttcattcacaaaaagcggttcatatgtcgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctaccttaaatagctttattt |
20510631 |
T |
|
| Q |
424 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaat |
523 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| | | ||||||||| |
|
|
| T |
20510632 |
ttggacatccaaacaaattgattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagtttggtcaaattatgaagtttaat |
20510731 |
T |
|
| Q |
524 |
ggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttga |
623 |
Q |
| |
|
| | |||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||| | ||||||||| ||| ||| | ||||||||||| |
|
|
| T |
20510732 |
gaatgtcaaatgaggaaacacaaaattaaccatctcatctggtccatcttccttggcaacaatttcttgaatcccacatttaattacttgaagactttga |
20510831 |
T |
|
| Q |
624 |
agttg |
628 |
Q |
| |
|
||||| |
|
|
| T |
20510832 |
agttg |
20510836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 314 - 628
Target Start/End: Original strand, 15895733 - 15896059
Alignment:
| Q |
314 |
tatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat--- |
410 |
Q |
| |
|
|||||||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||| |||||| ||||| || |||||||||||||| |||| |
|
|
| T |
15895733 |
tatatttgacgctacccttacttcttcgatcacaaaaagaggttgatatgttgagatattttgctcatcatttctgaaactttcttggtgtctcaaagtt |
15895832 |
T |
|
| Q |
411 |
---------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatt |
501 |
Q |
| |
|
||||||||||| || |||||| || |||| | || |||||||||||||||||||||| ||||| ||||| |||||||||||||| | || |
|
|
| T |
15895833 |
tctgccttaaatagctctattttcggacatccagacaagatgattgttttcaatgatttacattgaagggaatggaccccgacaaagaatgccttcagtt |
15895932 |
T |
|
| Q |
502 |
tggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccaca |
601 |
Q |
| |
|
|||||| | |||||| ||||||| || ||||||||||||| ||||| ||| |||||||| ||||||| |||| | |||||||||| | |||| |||| |
|
|
| T |
15895933 |
gggtcaaacaatcaagtgtaatggatgttaaatgaggaaacataaattgaactatctcatcaattccttcctcctcggcaacaatttcttgaatctcaca |
15896032 |
T |
|
| Q |
602 |
gttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
15896033 |
cttacttactcgaagactttgaagttg |
15896059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 331 - 628
Target Start/End: Original strand, 16453771 - 16454077
Alignment:
| Q |
331 |
ttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---------aatagctctat |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| || || || || ||||||||||||||||| | | ||||||||||| |
|
|
| T |
16453771 |
ttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcacttctggaactttcttggtgtcttagctctgtcttaaatagctctat |
16453870 |
T |
|
| Q |
422 |
atttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttta |
521 |
Q |
| |
|
||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || ||||||| || |
|
|
| T |
16453871 |
ttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaagttcaagtcta |
16453970 |
T |
|
| Q |
522 |
atggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagacttt |
621 |
Q |
| |
|
||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16453971 |
atgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttactcgaagacttt |
16454070 |
T |
|
| Q |
622 |
gaagttg |
628 |
Q |
| |
|
||||||| |
|
|
| T |
16454071 |
gaagttg |
16454077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 331 - 628
Target Start/End: Original strand, 16462928 - 16463234
Alignment:
| Q |
331 |
ttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---------aatagctctat |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| || || || || ||||||||||||||||| | | ||||||||||| |
|
|
| T |
16462928 |
ttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcacttctggaactttcttggtgtcttagctctgtcttaaatagctctat |
16463027 |
T |
|
| Q |
422 |
atttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttta |
521 |
Q |
| |
|
||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || ||||||| || |
|
|
| T |
16463028 |
ttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaagttcaagtcta |
16463127 |
T |
|
| Q |
522 |
atggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagacttt |
621 |
Q |
| |
|
||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16463128 |
atgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttactcgaagacttt |
16463227 |
T |
|
| Q |
622 |
gaagttg |
628 |
Q |
| |
|
||||||| |
|
|
| T |
16463228 |
gaagttg |
16463234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 423 - 628
Target Start/End: Complemental strand, 13517292 - 13517087
Alignment:
| Q |
423 |
tttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaa |
522 |
Q |
| |
|
||||||||| || |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | ||||||| ||| |
|
|
| T |
13517292 |
tttggacatccaaacaaatcgatctttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgttcaagtataa |
13517193 |
T |
|
| Q |
523 |
tggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttg |
622 |
Q |
| |
|
|||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || ||||| ||||||| |||||||||||| |
|
|
| T |
13517192 |
tggatgttaattgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacatttacttactcgaagactttg |
13517093 |
T |
|
| Q |
623 |
aagttg |
628 |
Q |
| |
|
|||||| |
|
|
| T |
13517092 |
aagttg |
13517087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13553260 - 13553089
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||| ||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553260 |
gaaccaactttatcagactggaacactcataaacattaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaag |
13553161 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
13553160 |
cttgtgcagctgccataattccaactctctg------------aattgaggtgtactctccacacttgtaagtagctcctgcaa |
13553089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 20486583 - 20486268
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| || | |||| || |
|
|
| T |
20486583 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttgtatctcaaaggctctgccttaaa |
20486484 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
20486483 |
tagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
20486384 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| | |
|
|
| T |
20486383 |
tgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttactt |
20486284 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20486283 |
taagactttgaagttg |
20486268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13678157 - 13677986
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||| ||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13678157 |
gaaccaactttatcagactggaacattggcaaacatcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaag |
13678058 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaa |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
13678057 |
cttgtgcagctgcaataattccaactctctg------------aattgaggtgtactctccacacttgtaagtagctcctgcaa |
13677986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 20378595 - 20378471
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||| |
|
|
| T |
20378595 |
gaaccaactttgtcagactggaacactgagaaacatcaatgctttcaagaaactgtagaacggggtccatctgaaatccttctttgcatatacattgaag |
20378496 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaac |
142 |
Q |
| |
|
|||| ||| ||||| ||||||||| |
|
|
| T |
20378495 |
cttgctcagttgccacaattccaac |
20378471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 448 - 595
Target Start/End: Original strand, 16491985 - 16492132
Alignment:
| Q |
448 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
547 |
Q |
| |
|
|||||| ||| ||||||||||||||||| || ||||||||||||||||||| ||||| || | ||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
16491985 |
ttttcagtgacttacattgaagagaatgtacaccaacaaagaatgccttaagtttgggtaaatgttcaagtctaatggatgttaaatgagaaaacacaaa |
16492084 |
T |
|
| Q |
548 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaat |
595 |
Q |
| |
|
| || |||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
16492085 |
ctgtactatctcatctgttccttcttcattggcgacaatttcttcaat |
16492132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16458595 - 16458744
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || | |||||||||||||||| |||| |||| |||||| ||| ||||||| |||||||||| ||| |||||||| |||||||||| ||| |
|
|
| T |
16458595 |
gaaccaactttattagactggaacactgatgaacaataatgatttcaataaaatgtagaatggggtccattttaaacccttctttgcatatatattgaag |
16458694 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgag |
167 |
Q |
| |
|
|||||||| ||||||||||| |||| | |||| | |||||||| ||||| |
|
|
| T |
16458695 |
cttgtgcaactgccataatttcaacagtttgagtcgcgggctaatttgag |
16458744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 19188590 - 19188715
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||||| |||||||||||||| || | || ||||||||| |||||| ||| ||| |
|
|
| T |
19188590 |
gaaccaactttatcagactggaacactgataaacccaaatgctttcaagaaaatgtagaactgggtcaatctaaactccttctttgcatatacattgaag |
19188689 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaact |
143 |
Q |
| |
|
|||| ||| | |||||||| ||||| |
|
|
| T |
19188690 |
cttggccaggttccataatttcaact |
19188715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 20509958 - 20510049
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatata |
109 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||| ||||||||| |||||| |
|
|
| T |
20509958 |
gaactaacattatcagactggaacactgataaacccaaatgctttcaagaaaatgtagaactggatcaatctgaactccttctttgcatata |
20510049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 16449019 - 16449141
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || | ||||||||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||| |||||||| |||||||||| ||| |
|
|
| T |
16449019 |
gaaccaactttattagactggaacagtgattaacattaatgctttcaataaaatgtagaatggggtccattttaaacccttctttgcatatatattgaag |
16449118 |
T |
|
| Q |
118 |
cttgtgcagctgccataattcca |
140 |
Q |
| |
|
| |||||| ||||| ||| |||| |
|
|
| T |
16449119 |
cctgtgcaactgccctaactcca |
16449141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 13517903 - 13517791
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||| ||| || |||||||| | ||||||||| |||| || |||||||||||||| |||||| ||||||| |
|
|
| T |
13517903 |
gaactaacattatcagactagaacactgatacacaattatactttcaagcatctgtagaacggggtttatctgaaatccttctttgcatatacatttaag |
13517804 |
T |
|
| Q |
118 |
cttgtgcagctgc |
130 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
13517803 |
cttatgcagctgc |
13517791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16484628 - 16484776
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
||||||||||| ||||| ||||||| || | ||||| |||||||||| ||| || |||| |||||||||| |||| ||||||| |||||||||| ||| |
|
|
| T |
16484628 |
gaaccaacattatcagattggaacaatgctcaacatttatgctttcaataaaatgaagaatggggtccattt-aaattcttctttgcatatatattgaag |
16484726 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaactctctgagccccgggctaaattgag |
167 |
Q |
| |
|
||||| ||| ||| |||| |||||||||||| |||||||| ||||| |
|
|
| T |
16484727 |
cttgtccagatgcgctaatgtcaactctctgagttgcgggctaatttgag |
16484776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 15895599 - 15895664
Alignment:
| Q |
234 |
ttgtgctaagtagaatattatcaca--aaattatcaatgaataacacttaaccaacgtaatagaca |
297 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
15895599 |
ttgtgttaagtagaatattatcacataaaactatcaatcaataacaatcaaccaacgtaatagaca |
15895664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 16491872 - 16491956
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||| ||||| |||||| ||||| |||| | |||||||||| ||| |||| |
|
|
| T |
16491872 |
ctacccttacctcgtcaatcacaaaaagaggttgatacgttgaaatattgagctcattatttcggaaactttcttgttgtctcaa |
16491956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 13517397 - 13517318
Alignment:
| Q |
330 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||| ||||| || || | || |||||||||||| |||| |
|
|
| T |
13517397 |
cttacctcttcaatcacaaaaagaggttgatattcagggatattgagctcatcaattcttgagctttcttggtgtctcaa |
13517318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 333 - 628
Target Start/End: Complemental strand, 42684 - 42377
Alignment:
| Q |
333 |
acctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctcta |
420 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
42684 |
acctcttcaatcacaaaaagaggttgatatgttgagatattaagcacatcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctcta |
42585 |
T |
|
| Q |
421 |
tatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttt |
520 |
Q |
| |
|
| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |
|
|
| T |
42584 |
ttgttggacatgtgaacaacttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtactcaaggtt |
42485 |
T |
|
| Q |
521 |
aatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactt |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| | ||||||||| | ||||| | |||||||| |
|
|
| T |
42484 |
aatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttcttgaatcccacactgacttacttgaagactt |
42385 |
T |
|
| Q |
621 |
tgaagttg |
628 |
Q |
| |
|
|||||||| |
|
|
| T |
42384 |
tgaagttg |
42377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 315 - 628
Target Start/End: Complemental strand, 48378 - 48053
Alignment:
| Q |
315 |
atatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---- |
410 |
Q |
| |
|
|||||| || |||| ||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
48378 |
atatttaacgctacacttacctcttcaatctcaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtct |
48279 |
T |
|
| Q |
411 |
--------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaattt |
502 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
48278 |
ctgccttaaatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgcctttagttt |
48179 |
T |
|
| Q |
503 |
ggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacag |
602 |
Q |
| |
|
|||||| | | |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| |
|
|
| T |
48178 |
ggtcaaattattaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacat |
48079 |
T |
|
| Q |
603 |
ttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
||| ||| | ||||| |||||||||| |
|
|
| T |
48078 |
ttaattacttgaagattttgaagttg |
48053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 48897 - 48773
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||| |
|
|
| T |
48897 |
gaaccaactttgtcagactggaacactgagaaacatcaatgctttcaagaaactgtagaacggggtccatctgaaatccttctttgcatatacattgaag |
48798 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaac |
142 |
Q |
| |
|
|||| ||| ||||| ||||||||| |
|
|
| T |
48797 |
cttgctcagttgccacaattccaac |
48773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 43302 - 43184
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||| ||||||||| ||| | ||| ||||| ||||||| || |||||||||||||| || |||||||||||||| |||||| ||| ||| |
|
|
| T |
43302 |
gaaccaactttatcatactggaacattgagacacacaaatggtttcaagtaattgtagaactgggtcgatctgaaatccttctttgcatatacattgaag |
43203 |
T |
|
| Q |
118 |
cttgtgcagctgccataat |
136 |
Q |
| |
|
|||| ||| ||||||||| |
|
|
| T |
43202 |
cttggtcaggtgccataat |
43184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 332 - 628
Target Start/End: Original strand, 38052515 - 38052823
Alignment:
| Q |
332 |
tacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctct |
419 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || |||||| |||| ||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
38052515 |
tacctcttcaatcacaaaaaggggttgatattgagatatattgacctcatcatttgtggagctttcttggtgtttcaaaggttctgccttaaatagctct |
38052614 |
T |
|
| Q |
420 |
atatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtt |
519 |
Q |
| |
|
|| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | | ||||| |
|
|
| T |
38052615 |
atttttggacatccgaacaacttgatcattttcaatgatttacattgaagagaatgaactccaacaaagaatgccttaagtttggtcaagaaattaagtt |
38052714 |
T |
|
| Q |
520 |
taatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagact |
619 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| | | |||||| |
|
|
| T |
38052715 |
caatggatgtcaaatgaggaaacacaaatttaaccatttcatctgttccttcttccttggcaacaatttcttcaatcccacagttactgactagaagaca |
38052814 |
T |
|
| Q |
620 |
ttgaagttg |
628 |
Q |
| |
|
||||||||| |
|
|
| T |
38052815 |
ttgaagttg |
38052823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 330 - 628
Target Start/End: Original strand, 30702565 - 30702872
Alignment:
| Q |
330 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| || ||||||||| || |||| ||||||| |
|
|
| T |
30702565 |
cttacctcttcaatcacaaaaagaggttgatattttgagatattgagctcatcatttcaggtgctttcttggagtctcaaaggttctgctttaaatagct |
30702664 |
T |
|
| Q |
418 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
517 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
30702665 |
ctatatttggacatgaaaacaactttatcgttttcaatgatttacattgaagagaatggaccccaagaaaaaatgccttaagtttgggcaaatattcaag |
30702764 |
T |
|
| Q |
518 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
617 |
Q |
| |
|
| | ||| || ||| ||||||||||||||||||| ||||| | |||| |||||||| |||||||||| | ||||||||| |||||| | ||||| |
|
|
| T |
30702765 |
cgtgagggatgttaaacgaggaaacacaaatttaactatctctttcgttc---cttccttggcaacaatttcttgaatcccacaattacttgcttgaaga |
30702861 |
T |
|
| Q |
618 |
ctttgaagttg |
628 |
Q |
| |
|
||||||||||| |
|
|
| T |
30702862 |
ctttgaagttg |
30702872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 314 - 628
Target Start/End: Original strand, 38054695 - 38055021
Alignment:
| Q |
314 |
tatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat--- |
410 |
Q |
| |
|
||||||| || |||| | |||||||||||||||||| |||| ||||||| ||||||||||| ||||| ||||| | || |||||||| ||| |||| |
|
|
| T |
38054695 |
tatatttaacgctacccatacctcttcaatcacaaagagaggttgatattttgagatattgagctcatcatttcttgagctttcttgttgtctcaaaggt |
38054794 |
T |
|
| Q |
411 |
---------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatt |
501 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||| ||||| || |
|
|
| T |
38054795 |
tcttccttaaatagatctattcttggacatctgaacaacttgattgttttcaaagatttacattgaagagaatgagccccaacaaagaatgtcttaagtt |
38054894 |
T |
|
| Q |
502 |
tggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccaca |
601 |
Q |
| |
|
||| ||| | ||||||| | ||||| || ||||||||||||||||| ||||| |||||| ||||||||| |||||| |||| ||||| | ||||||||| |
|
|
| T |
38054895 |
tgggcaaatcttcaagtgtgatggatgttaaatgaggaaacacaaacttaactatctcacatgttccttcgtccttggcaacgatttcttgaatcccaca |
38054994 |
T |
|
| Q |
602 |
gttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
38054995 |
gttacttactttcagactttgaagttg |
38055021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 38051901 - 38051991
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatat |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38051901 |
gaaccaaatttgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaaaccttctttgcatat |
38051991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 38054120 - 38054245
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaaca-taaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaa |
116 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||| | ||| ||||||||||| |||| ||| |||||||| |||||||||||||| |||||| ||| || |
|
|
| T |
38054120 |
gaaccaactttgtcagactggaacacttagaaacaattaat-ctttcaagaaaatgtaaaacggggtccatctgaaatccttctttgcatatacattgaa |
38054218 |
T |
|
| Q |
117 |
gcttgtgcagctgccataattccaact |
143 |
Q |
| |
|
||||| ||| |||||||| ||||||| |
|
|
| T |
38054219 |
gcttgctcaggtgccataagtccaact |
38054245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 30701978 - 30702081
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || | ||||||||||||||| ||||| || |||||||||||| ||||| ||||| ||||||||||||||||| |||||| ||| ||| |
|
|
| T |
30701978 |
gaaccaactttattagactggaacactgagaaacagttattttttcaagaaactctagaatggggtctatttgaaatccttctttgcatatacattgaag |
30702077 |
T |
|
| Q |
118 |
cttg |
121 |
Q |
| |
|
|||| |
|
|
| T |
30702078 |
cttg |
30702081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 8e-69; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 448 - 628
Target Start/End: Original strand, 20805914 - 20806094
Alignment:
| Q |
448 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20805914 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtactcaaggttaatggaagtcaaatgaggaaacacaaa |
20806013 |
T |
|
| Q |
548 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || ||||| | ||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
20806014 |
tttaaccatctcatatgttccttcttccttggccacgatttcttgaatcccacacttacttacttgaagactttgaagttg |
20806094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 325 - 628
Target Start/End: Original strand, 20771851 - 20772166
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |||||||||||| |||| || |
|
|
| T |
20771851 |
ctacccttacctcttcaatcacaaaaagaggttgatattttgagatattcagctcatcatttttggagctttcttggtgtctcaaaggttcttccttaaa |
20771950 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | | |
|
|
| T |
20771951 |
tagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgt |
20772050 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| || |
|
|
| T |
20772051 |
ttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttactc |
20772150 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20772151 |
gaagactttgaagttg |
20772166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 325 - 628
Target Start/End: Original strand, 20781645 - 20781960
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |||||||||||| |||| || |
|
|
| T |
20781645 |
ctacccttacctcttcaatcacaaaaagaggttgatattttgagatattcagctcatcatttttggagctttcttggtgtctcaaaggttcttccttaaa |
20781744 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | | |
|
|
| T |
20781745 |
tagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgt |
20781844 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| || |
|
|
| T |
20781845 |
ttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttactc |
20781944 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20781945 |
gaagactttgaagttg |
20781960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 336 - 628
Target Start/End: Original strand, 20834702 - 20835006
Alignment:
| Q |
336 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
423 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
20834702 |
tcttcattcacaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctgccttaaatagctctattt |
20834801 |
T |
|
| Q |
424 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaa-gtattcaagtttaa |
522 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
20834802 |
ttggacatccaaacaaattaattgttttcaatgatttgcatcgaagagaatggaccccaacaaagaatgccttaagtttggtcaaagtatg-aagtttaa |
20834900 |
T |
|
| Q |
523 |
tggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttg |
622 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||| | ||| | |||| || |||||||||| | ||||||||| ||| ||| | |||||||||| |
|
|
| T |
20834901 |
tgaatgtcaaatgaggaaacacaaatttaaccatctcatccggtccatattccctggcaacaatttcttgaatcccacatttaattactagaagactttg |
20835000 |
T |
|
| Q |
623 |
aagttg |
628 |
Q |
| |
|
|||||| |
|
|
| T |
20835001 |
aagttg |
20835006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 411 - 634
Target Start/End: Original strand, 20769000 - 20769223
Alignment:
| Q |
411 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
510 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20769000 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20769099 |
T |
|
| Q |
511 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
610 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20769100 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20769199 |
T |
|
| Q |
611 |
tcgaagactttgaagttgtttcat |
634 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20769200 |
tcgaagactttgaagctgcttcat |
20769223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 411 - 634
Target Start/End: Original strand, 20778794 - 20779017
Alignment:
| Q |
411 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
510 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20778794 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20778893 |
T |
|
| Q |
511 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
610 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20778894 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20778993 |
T |
|
| Q |
611 |
tcgaagactttgaagttgtttcat |
634 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20778994 |
tcgaagactttgaagctgcttcat |
20779017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 20780726 - 20780851
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
20780726 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaag |
20780825 |
T |
|
| Q |
118 |
cttgtgcagctgccataattccaact |
143 |
Q |
| |
|
|||| ||| |||| ||||| ||||| |
|
|
| T |
20780826 |
cttgctcaggtgccgtaatttcaact |
20780851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20768296 - 20768399
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
20768296 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaag |
20768395 |
T |
|
| Q |
118 |
cttg |
121 |
Q |
| |
|
|||| |
|
|
| T |
20768396 |
cttg |
20768399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20770932 - 20771035
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
20770932 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaag |
20771031 |
T |
|
| Q |
118 |
cttg |
121 |
Q |
| |
|
|||| |
|
|
| T |
20771032 |
cttg |
20771035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20778090 - 20778193
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
20778090 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaag |
20778189 |
T |
|
| Q |
118 |
cttg |
121 |
Q |
| |
|
|||| |
|
|
| T |
20778190 |
cttg |
20778193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 411 - 628
Target Start/End: Original strand, 20841556 - 20841774
Alignment:
| Q |
411 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
510 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20841556 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20841655 |
T |
|
| Q |
511 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
609 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20841656 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20841755 |
T |
|
| Q |
610 |
ttcgaagactttgaagttg |
628 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20841756 |
ctggaagactttgaagttg |
20841774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 411 - 628
Target Start/End: Original strand, 20849650 - 20849868
Alignment:
| Q |
411 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
510 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20849650 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20849749 |
T |
|
| Q |
511 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
609 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20849750 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20849849 |
T |
|
| Q |
610 |
ttcgaagactttgaagttg |
628 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20849850 |
ctggaagactttgaagttg |
20849868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20848928 - 20849028
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||| |||||||| || ||| |||||||||||||| ||||||| ||||||||| |||||| ||| ||| |
|
|
| T |
20848928 |
gaactaacattatcagactggaacactgatgaacccgaatgcttttaacaaaatgtagaactgggtcaatttgaactccttctttgcatatacattgaag |
20849027 |
T |
|
| Q |
118 |
c |
118 |
Q |
| |
|
| |
|
|
| T |
20849028 |
c |
20849028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20840834 - 20840934
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||| |||||||| || ||| ||||||||||||| ||||||| ||||||||| |||||| ||| ||| |
|
|
| T |
20840834 |
gaactaacattatcagactggaacactgatgaacccgaatgcttttaacaaaatgtagaactgggttaatttgaactccttctttgcatatacattgaag |
20840933 |
T |
|
| Q |
118 |
c |
118 |
Q |
| |
|
| |
|
|
| T |
20840934 |
c |
20840934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 20768902 - 20768986
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| ||||||||| ||||| || || | || |||| ||||||| |||| |
|
|
| T |
20768902 |
ctacacttacctcttcaattacaaaaagaggttgatattgagagatattgagctcatcaattcttgagcttttttggtgtctcaa |
20768986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 20778696 - 20778780
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| ||||||||| ||||| || || | || |||| ||||||| |||| |
|
|
| T |
20778696 |
ctacacttacctcttcaattacaaaaagaggttgatattgagagatattgagctcatcaattcttgagcttttttggtgtctcaa |
20778780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 20841478 - 20841542
Alignment:
| Q |
345 |
acaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
20841478 |
acaaaaagaggttgattagttgagatattgagatcatcatttttggaagtttctcggtgtctcaa |
20841542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 20849572 - 20849636
Alignment:
| Q |
345 |
acaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
409 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
20849572 |
acaaaaagaggttgattagttgagatattgagatcatcatttttggaagtttctcggtgtctcaa |
20849636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 411 - 628
Target Start/End: Original strand, 32466 - 32683
Alignment:
| Q |
411 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
510 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32466 |
aatagctctattgttggacatgtgaacaacatgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
32565 |
T |
|
| Q |
511 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
610 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| | ||||| |
|
|
| T |
32566 |
actcaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttctagaatcccacactgacttac |
32665 |
T |
|
| Q |
611 |
tcgaagactttgaagttg |
628 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
32666 |
ttgaagactttgaagttg |
32683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 31761 - 31879
Alignment:
| Q |
18 |
gaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaag |
117 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||| ||| ||||| ||||||| || ||||||||||||||||| |||||||||||||| |||||| ||| ||| |
|
|
| T |
31761 |
gaaccaactttatcatactggaacattgatacacacaaatggtttcaagtaattgtagaactgggtccatctgaaatccttctttgcatatacattgaag |
31860 |
T |
|
| Q |
118 |
cttgtgcagctgccataat |
136 |
Q |
| |
|
|||| ||| ||||||||| |
|
|
| T |
31861 |
cttggtcaggtgccataat |
31879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 12137 - 11822
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| | | |||| || |
|
|
| T |
12137 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttttatctcaaaggctctgccttaaa |
12038 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||| ||| ||||||||| |||| || || ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
12037 |
tagctgtatttttggacatccatagaagttgatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
11938 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||| | ||||| | |
|
|
| T |
11937 |
agaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaatcccacactgacttactt |
11838 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11837 |
gaagactttgaagttg |
11822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 325 - 628
Target Start/End: Complemental strand, 7572 - 7257
Alignment:
| Q |
325 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| || | |||| || |
|
|
| T |
7572 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttgtatctcaaaggctctgccttaaa |
7473 |
T |
|
| Q |
413 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
512 |
Q |
| |
|
||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
7472 |
tagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
7373 |
T |
|
| Q |
513 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
612 |
Q |
| |
|
| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| | |
|
|
| T |
7372 |
tgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttactt |
7273 |
T |
|
| Q |
613 |
gaagactttgaagttg |
628 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7272 |
taagactttgaagttg |
7257 |
T |
|
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