View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18498_low_3 (Length: 550)

Name: NF18498_low_3
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18498_low_3
NF18498_low_3
[»] chr1 (1 HSPs)
chr1 (1-535)||(18717618-18718143)
[»] chr4 (6 HSPs)
chr4 (474-521)||(15665338-15665385)
chr4 (474-520)||(2589309-2589355)
chr4 (474-520)||(7066498-7066544)
chr4 (474-520)||(51438682-51438728)
chr4 (491-524)||(6478658-6478691)
chr4 (474-519)||(23906297-23906342)
[»] scaffold0570 (1 HSPs)
scaffold0570 (474-520)||(947-993)
[»] chr8 (2 HSPs)
chr8 (474-520)||(44047531-44047577)
chr8 (475-520)||(30559936-30559981)
[»] chr7 (5 HSPs)
chr7 (474-520)||(45840995-45841041)
chr7 (474-519)||(20158671-20158716)
chr7 (473-521)||(12291395-12291443)
chr7 (474-526)||(14593989-14594041)
chr7 (474-526)||(16013512-16013564)
[»] chr3 (4 HSPs)
chr3 (474-520)||(45374476-45374522)
chr3 (491-520)||(36764939-36764968)
chr3 (474-519)||(47233596-47233641)
chr3 (491-524)||(54128633-54128666)
[»] chr2 (5 HSPs)
chr2 (474-519)||(11992108-11992153)
chr2 (474-523)||(19863471-19863520)
chr2 (474-523)||(19867803-19867852)
chr2 (474-523)||(19872704-19872753)
chr2 (474-526)||(28508915-28508967)
[»] chr5 (1 HSPs)
chr5 (474-522)||(2645227-2645275)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 18717618 - 18718143
Alignment:
Q  1 ccatctccatttcctaactaactttccattttcaattt-cttcattttagactgttgcgatgaagttcatcatgaaacacggtaaaacggaaaaggatat 99  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18717618 ccatttccattttctaactaactttccattttcaattttcttccgtttagactgttgcgatgaagttcatcatgaaacacggtaaaacggaaaaggatat 18717717  T
Q  100 tcataatttgagacaagaaattgaggtaattcgtttaatttattcatcaaattcgactttgttttaattaacgcgatctgattctgtgttttctctttgt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18717718 tcataatttgagacaagaaattgaggtaattcgtttaatttattcatcaatttcgactttgttttaattaacgcgatttgattctgtgttttctctttgt 18717817  T
Q  200 tatgagttcatttttgtgcgatttgatgctgattgtgatgctgcaattgttagggtttctgttaatgtatttaggttgaattcgaaaaacaagttttctt 299  Q
    ||||| |||||||||||||||||           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18717818 tatgaattcatttttgtgcgatt-----------gtgatgctgcaattgttagggtttctgtttatgtatttaggttgaattcgaaaaacaagttttctt 18717906  T
Q  300 tgtcactgatgcaaaaagtattgtt-atagtcttgcgattattgccacgggagtgtggagttaagaagctactgctaactgtttttaaaattggtattgg 398  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18717907 tgtcactgatgcaaaaagtattgtttatagtattgcgattattgccacgggagtgtggagttaagaagctactgctaactgtttttaaaattggtattgg 18718006  T
Q  399 tattggtattgctatctatgcagcaccgataccaaaacggtgtccagtaacgcgtgtcagtgccctgcactgacacatgtagctgtcccaagttagtggt 498  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||| |||    
T  18718007 tattggtattgctatctatgtagcaccgataccaaaacggtgtccagtaacccgcgtcagtgccctacactgacacatgtagctgacccaagttagcggt 18718106  T
Q  499 ataaggcttggttgttgttgttattgattgatcggtg 535  Q
    |||||||||||||||||||||||||||||||||||||    
T  18718107 ataaggcttggttgttgttgttattgattgatcggtg 18718143  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 521
Target Start/End: Original strand, 15665338 - 15665385
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtta 521  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||||    
T  15665338 catgtagctgaccccacttagtgggataaggcttggttgttgttgtta 15665385  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 2589309 - 2589355
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||  ||| ||||||||| ||||||||||||||||||||||    
T  2589309 catgtagctaaccccagttagtgggataaggcttggttgttgttgtt 2589355  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 7066544 - 7066498
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  7066544 catgtagctgaccccatttagtgggataaggcttggttgttgttgtt 7066498  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 51438682 - 51438728
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||||| || |||| ||||||||||||||||||||||    
T  51438682 catgtagctgacccaactttgtgggataaggcttggttgttgttgtt 51438728  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 6478691 - 6478658
Alignment:
Q  491 ttagtggtataaggcttggttgttgttgttattg 524  Q
    ||||||| ||||||||||||||||||||||||||    
T  6478691 ttagtgggataaggcttggttgttgttgttattg 6478658  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 23906342 - 23906297
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgt 519  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||    
T  23906342 catgtagctgaccccacttagtgggataaggcttggttgttgttgt 23906297  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 993 - 947
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  993 catgtagctgaccccatttagtgggataaggcttggttgttgttgtt 947  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 44047577 - 44047531
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  44047577 catgtagctgaccccacttagtgggataaggcttggttgttgttgtt 44047531  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 30559936 - 30559981
Alignment:
Q  475 atgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    ||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  30559936 atgtagccgaccccagttagtgggataaggcttggttgttgttgtt 30559981  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 45841041 - 45840995
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||| | ||||||||||||| ||||||||||||||||    
T  45841041 catgtagctgaccccaattagtggtataagacttggttgttgttgtt 45840995  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 20158716 - 20158671
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgt 519  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||    
T  20158716 catgtagctgaccctacttagtgggataaggcttggttgttgttgt 20158671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 521
Target Start/End: Original strand, 12291395 - 12291443
Alignment:
Q  473 acatgtagctgtcccaagttagtggtataaggcttggttgttgttgtta 521  Q
    ||||||||||| ||  | ||||||||| |||||||||||||||||||||    
T  12291395 acatgtagctgacctcacttagtggtaaaaggcttggttgttgttgtta 12291443  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 14593989 - 14594041
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttattgat 526  Q
    |||||||| | ||| | ||||||| |||||||||||||||||||||| |||||    
T  14593989 catgtagccgaccccacttagtgggataaggcttggttgttgttgttgttgat 14594041  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 16013512 - 16013564
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttattgat 526  Q
    |||||||| | ||| | ||||||| |||||||||||||||||||||| |||||    
T  16013512 catgtagccgaccccacttagtgggataaggcttggttgttgttgttgttgat 16013564  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 45374522 - 45374476
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgtt 520  Q
    |||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  45374522 catgtagctgaccccacttagtgggataaggcttggttgttgttgtt 45374476  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Original strand, 36764939 - 36764968
Alignment:
Q  491 ttagtggtataaggcttggttgttgttgtt 520  Q
    ||||||||||||||||||||||||||||||    
T  36764939 ttagtggtataaggcttggttgttgttgtt 36764968  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 47233641 - 47233596
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgt 519  Q
    |||||||| | ||| ||||||||| |||||||||||||||||||||    
T  47233641 catgtagccgaccccagttagtgggataaggcttggttgttgttgt 47233596  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Original strand, 54128633 - 54128666
Alignment:
Q  491 ttagtggtataaggcttggttgttgttgttattg 524  Q
    ||||||| ||||||||||||||||||||||||||    
T  54128633 ttagtgggataaggcttggttgttgttgttattg 54128666  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 11992153 - 11992108
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgt 519  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||    
T  11992153 catgtagctgaccccacttagtggaataaggcttggttgttgttgt 11992108  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 19863471 - 19863520
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttatt 523  Q
    |||||||| ||||| | ||||||| |||| ||||||||||||||||||||    
T  19863471 catgtagccgtccccacttagtgggataaagcttggttgttgttgttatt 19863520  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 19867803 - 19867852
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttatt 523  Q
    |||||||| ||||| | ||||||| |||| ||||||||||||||||||||    
T  19867803 catgtagccgtccccacttagtgggataaagcttggttgttgttgttatt 19867852  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 19872704 - 19872753
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttatt 523  Q
    |||||||| ||||| | ||||||| |||| ||||||||||||||||||||    
T  19872704 catgtagccgtccccacttagtgggataaagcttggttgttgttgttatt 19872753  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 28508915 - 28508967
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttattgat 526  Q
    |||||||| | ||| | ||||||| |||||||||||||||||||||| |||||    
T  28508915 catgtagccgaccccacttagtgggataaggcttggttgttgttgtttttgat 28508967  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 2645227 - 2645275
Alignment:
Q  474 catgtagctgtcccaagttagtggtataaggcttggttgttgttgttat 522  Q
    |||||||| | ||| | ||||||| ||||||||||||||||||||||||    
T  2645227 catgtagccggccctacttagtgggataaggcttggttgttgttgttat 2645275  T

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