View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_low_4 (Length: 520)
Name: NF18498_low_4
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 29 - 505
Target Start/End: Original strand, 42198106 - 42198582
Alignment:
| Q |
29 |
agaacctgtgattggtagtatgatagggagtaaaatgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgactt |
128 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198106 |
agaacctgtaattggtagtatgatagggagtaaaatgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataactt----- |
42198200 |
T |
|
| Q |
129 |
gattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198201 |
gattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaa |
42198300 |
T |
|
| Q |
229 |
agacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatg-atagatccaaagtcacaagtgatgc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42198301 |
agacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgaatagatccaaagtcacaagtgatgc |
42198400 |
T |
|
| Q |
328 |
taaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaagtattttcaatccgc----ttacttctaatttaggaatgttccc |
423 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42198401 |
taaatcccctagactatttggaattgagccactaaatttgtttctagccatcacaagtattttcaatccgcttaattacttctaatttaggaatgttccc |
42198500 |
T |
|
| Q |
424 |
tgacaaccaaatgttcgaaataaccatggtctctagatgctccatttttaactcaggaggaatcgaaccattcaaagagttt |
505 |
Q |
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| T |
42198501 |
tgacaaccagttgttcgaaataaccatggtctctagatgctccatttttaactcaggaggaatcgaacctttcaaagagttt |
42198582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 44 - 497
Target Start/End: Original strand, 42210697 - 42211145
Alignment:
| Q |
44 |
tagtatgatagggagtaaaatgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgc |
143 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||| | |
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| T |
42210697 |
tagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaagtgactcctaacttgtgcataactt-----gattgttaaggccac |
42210791 |
T |
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| Q |
144 |
atagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatct |
243 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||| | |||||| |||||||||||| | |
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| T |
42210792 |
atagtttgttgttaccttggagatcaacctggcttaggttcataaaaataccttccataggaacttccccttccaatttgttgaaggacaaatttaattt |
42210891 |
T |
|
| Q |
244 |
caccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgatagatccaaagtcacaagtgatgctaaatcccctagacta |
343 |
Q |
| |
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||||||||||| |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
42210892 |
caccatatacttgagcttttctaaactctcagggattggaccagtgagactgtttgatgatagatctaaagtcacaagggatggcaaatcccctagacta |
42210991 |
T |
|
| Q |
344 |
tttggaatcgagccactaaatttgtttctagccatcacaagtattttcaatccgcttacttctaatttaggaatgttccctgacaaccaaatgttcgaaa |
443 |
Q |
| |
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|||||||| ||||||||||| |||||||| ||||||| |||| ||||||||||| | ||||| | |||||||||||||||||||| | ||| ||||| |
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| T |
42210992 |
tttggaattgagccactaaaattgtttcttgccatcataagtgttttcaatccgttaacttcgattttaggaatgttccctgacagcttgttgtccgaaa |
42211091 |
T |
|
| Q |
444 |
taaccatggtctctagatgctccatttttaactcaggaggaatcgaaccattca |
497 |
Q |
| |
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|||||||| |||||| ||||||||||| || | |||||||| |||||| |||| |
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|
| T |
42211092 |
caaccatggcctctagctgctccattttgaattgaggaggaagcgaaccgttca |
42211145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 125 - 497
Target Start/End: Original strand, 42222989 - 42223361
Alignment:
| Q |
125 |
acttgattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgt |
224 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| || |||||||| | || |
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| T |
42222989 |
acttcattgttaaggccacatagtttgttgttaccttggatatcaacctggcttaggttcataaaaacgccttccataggaacttccccttccaatttgt |
42223088 |
T |
|
| Q |
225 |
tgaaagacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgatagatccaaagtcacaagtga |
324 |
Q |
| |
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|||| |||||||||||| ||| ||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| || |
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| T |
42223089 |
tgaaggacaaatttaatttcatcatatactcaagcttttctaaactcacgggaattgaaccagtgagattgtttgatgatagatctaaagtcacaaggga |
42223188 |
T |
|
| Q |
325 |
tgctaaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaagtattttcaatccgcttacttctaatttaggaatgttccct |
424 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||| ||||| | |||||||||||||||| |
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| T |
42223189 |
tgctaaatcacctagactatttggaattgagccactaaaattgtttcttgccatcactagtgttttcaatccgtcaacttcgattttaggaatgttccct |
42223288 |
T |
|
| Q |
425 |
gacaaccaaatgttcgaaataaccatggtctctagatgctccatttttaactcaggaggaatcgaaccattca |
497 |
Q |
| |
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|||| | ||| |||| |||||||| | |||| |||||||| || ||| |||||||| ||||||||||| |
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| T |
42223289 |
gacagcatgttgtctgaaacaaccatggccactagctgctccatcttgaacgaaggaggaagcgaaccattca |
42223361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 44 - 304
Target Start/End: Complemental strand, 33701184 - 33700929
Alignment:
| Q |
44 |
tagtatgatagggagtaaaatgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgc |
143 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| ||| ||| ||||||| ||||||| ||||| |||||||| |||||| | ||||||| ||| | |
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| T |
33701184 |
tagtatgataggtagtaaaatgtttgttttgtttttcttagatgcaacacacaaagtgactcctaacttgtgggtaacttca-----ttgttaacgccac |
33701090 |
T |
|
| Q |
144 |
atagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatct |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| | |||||| |||||||||||| | |
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| T |
33701089 |
atagtttgttgttaccttggagatcaacctagcttaggttcataaaaacaccttccataggaacttccccttccaatttgttgaaggacaaatttaattt |
33700990 |
T |
|
| Q |
244 |
caccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgat |
304 |
Q |
| |
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|| ||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| |
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|
| T |
33700989 |
catcatatactcaagcttttctaaactcacgggaattggaccagtgagattgtttgatgat |
33700929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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