View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18498_low_9 (Length: 317)
Name: NF18498_low_9
Description: NF18498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18498_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 85 - 299
Target Start/End: Original strand, 43953277 - 43953491
Alignment:
| Q |
85 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacattcatggttactcttgcacatgttgaaaccttgattaagttaagcatt |
184 |
Q |
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| T |
43953277 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacactcatggttactcatgcacatgttgaaaccttgattaagttaagcatt |
43953376 |
T |
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| Q |
185 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953377 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
43953476 |
T |
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| Q |
285 |
tcgtatgagtatcat |
299 |
Q |
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||||||||||||||| |
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| T |
43953477 |
tcgtatgagtatcat |
43953491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 43953156 - 43953234
Alignment:
| Q |
7 |
tcgaagaatatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
85 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953156 |
tcgaacaaaatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
43953234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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