View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1849R-Insertion-1 (Length: 870)
Name: NF1849R-Insertion-1
Description: NF1849R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849R-Insertion-1 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Original strand, 25507587 - 25508102
Alignment:
| Q |
8 |
acaatagtcataaaaaaccaagacaactggatcaagattttatcaagcaagcaaattcttcaatcaaaacattgtcaagaaacacatcatttgtgccaag |
107 |
Q |
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| T |
25507587 |
acaatagtcataaaaaac-aagacaattggatcaagattttatcaagcaagcaaattcttcaatcaaaacattgtcaagaaatacatcatttgtgccaag |
25507685 |
T |
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| Q |
108 |
tcattcaagccatcgtttgaacttgatgatcatatgggtgattgatatattcaaatatcaagacaatcttttggataaagtattgaagatcatatgccta |
207 |
Q |
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| T |
25507686 |
tcattcaagccatcgtttgaacttgatgatcatctgggtgattgatatattcaaatatcaagacaatcttttggataaagtattgaagatcacatgccta |
25507785 |
T |
|
| Q |
208 |
gctttgatttggctcagaagctattaagatcttcaaagtactaagaagtgattccattggatttaataaccatcgatcgaaggtatagatgaaccatgta |
307 |
Q |
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| T |
25507786 |
gatttgatttgactcagaagctattaagatcttcaaagtacaaagaagtgattccattggatttaataaccatcgatcgaaggtatagatgaaccatgta |
25507885 |
T |
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| Q |
308 |
atatgatatttaaccatcttcatgatagcaattttatatctttattttagccatgtttccactgatccatttttgtccctcgacgatatcctatttcata |
407 |
Q |
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| T |
25507886 |
atatgatatttaaccatcttcatgatagcaattttatatctttattttagccatgtttccactgatccatttttgtccctcgacaatatcctatttcaaa |
25507985 |
T |
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| Q |
408 |
atattctccacatgaaaactgaaacttttaaaggaattaaaccattccaaactgctgcaagatcccttgaatcatcgactacaaattctccttgaatcga |
507 |
Q |
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| T |
25507986 |
atattctccacatgaaaactggaacttttaaaggaattaaaccattccaaactgctgcaagatcccttgaatcatcgactacaaattctcctagaatcga |
25508085 |
T |
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| Q |
508 |
tgcataaactactttta |
524 |
Q |
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| T |
25508086 |
tgcataaactactttta |
25508102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 4388218 - 4388317
Alignment:
| Q |
149 |
ttgatatattcaaatatcaagacaatcttttggataaagtattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtac |
248 |
Q |
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| T |
4388218 |
ttgatatattcaaatgtgaagacaatcatttggataaagtatttaaaatcacgtgcctagctctgatttggctcgaaatcacttaagatcttcaaagtac |
4388317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 13335229 - 13335352
Alignment:
| Q |
258 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttatatctttatttta |
356 |
Q |
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| T |
13335229 |
attccattggatttaataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaaccatctccaagatagcaattttatttcttc----ta |
13335324 |
T |
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| Q |
357 |
gccatgtttccactgatccatttttgtc |
384 |
Q |
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| T |
13335325 |
gccatgattccaccgatccatttttgtc |
13335352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 413 - 480
Target Start/End: Original strand, 13335643 - 13335710
Alignment:
| Q |
413 |
ctccacatgaaaactgaaacttttaaaggaattaaaccattccaaactgctgcaagatcccttgaatc |
480 |
Q |
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| T |
13335643 |
ctccacacaaaaactgaaactttcaatggaattaaaccattcctcaccgcagcaagatcccttgaatc |
13335710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 10497368 - 10497455
Alignment:
| Q |
258 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttat |
344 |
Q |
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| T |
10497368 |
attccattggatataataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaacgatctccaagatagcaattttat |
10497455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 18263 - 18336
Alignment:
| Q |
188 |
tattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtactaagaagtgattc |
261 |
Q |
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||||||||||||| || | | ||| ||||| ||| ||||||||||||||||||||||||| ||||| |||||| |
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| T |
18263 |
tattgaagatcatgtggccatattttatttgactcggaagctattaagatcttcaaagtacaaagaaatgattc |
18336 |
T |
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