View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1849R-Insertion-2 (Length: 762)

Name: NF1849R-Insertion-2
Description: NF1849R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1849R-Insertion-2
NF1849R-Insertion-2
[»] chr5 (1 HSPs)
chr5 (7-762)||(42450456-42451218)


Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 7 - 762
Target Start/End: Complemental strand, 42451218 - 42450456
Alignment:
Q  7 cagcaacaatgaccaattttgagcaaatcaacaaatatttaaacaacaattagtaattttgagcaaatcaacaaactaatcaacaacaacccccagtttt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42451218 cagcaacgatgaccaattttgagcaaatcaacaaatatttaaacaacaattagtaattttgagcaaatcaacaaactaatcaacaacaacccccagtttt 42451119  T
Q  107 aatgattgtcgaaaaatccccaa-tcaatannnnnnnn--aagttcacaaatcaagttccttagtggaattaatccaggatatatctgggaaaacannnn 203  Q
    |||||||||||||||||||| || ||||||          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||        
T  42451118 aatgattgtcgaaaaatccctaaatcaatattttttttttaagttcacaaatcaagttacttagtggaattaatccaggatatatctgggaaaacatttt 42451019  T
Q  204 nnnnctttctaatgacttgtatatttaggaacaaatgtatgaagnnnnnnngagtatgaattgaaccggattccctacgcgttggtgatttgagcatgta 303  Q
        ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  42451018 ttttctttctaatgacttgtatatttaggaacaaatgtatgaagttttttttagtatgaattgaaccagattccctacgcgtaggtggtttgagcatgta 42450919  T
Q  304 gagagaagacatgatgattatgcctagataagaatgatagtcggatcaccagagacagaggaaactagaaaaagtatataata-----aagcattatgac 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||     ||||||||||||    
T  42450918 gagagaagacatgatgattatgcctagataagaatgatagtcggatcactagagacagaaaaaactagaaaaactatataatataataaagcattatgac 42450819  T
Q  399 aaacatcatttgtgatnnnnnnntattacgacgtaatttaatccaggtaaacaacccaattgaaccggatataatagggtttacaactttcacacatatt 498  Q
    ||||||||||||||||        ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  42450818 aaacatcatttgtgataaaaac--attacgacgtaatttaatccagagaaacaacccaatcgaaccggatataatagggtttacaactttcaca--tatt 42450723  T
Q  499 gtgcatcaactacttgtgctagtgctagacctagatgtaaactaatatatgaatattttattgctcacaaaagctatgaaaccttcatacaagggtacca 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42450722 gtgcatcaactacttgtgctagtgctagacctagatgtaaactaatatatgaatattttattgctcacaaaagctatgaaaccttcatacaagggtaccg 42450623  T
Q  599 tatgccacatctacgaaatactatttttgaagcatccatgcacgcgaacttctttcattctaaacannnnnnnac-aaacagttcatctaataataatag 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||    
T  42450622 tatgccacatctacgaaatactatttttgaagcatccatgcacgcgaacttctttcattctaaacatttttttacaaaacagttcatctaataataatag 42450523  T
Q  698 aaagaaagaaaaa--atatatactagagaacaacagggggtgagaatgaagggacacttacttgcag 762  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42450522 aaagaaaaaaaaaatatatatactagagaacaacagggggtgagaatgaagggacacttacttgcag 42450456  T

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