View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1849R-Insertion-3 (Length: 410)
Name: NF1849R-Insertion-3
Description: NF1849R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849R-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Original strand, 41439700 - 41440102
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439700 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
41439799 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439800 |
tttcaacaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
41439899 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439900 |
caatcagcttcaagtttttctctaaaaattggaaaaactccaatgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttat |
41439999 |
T |
|
| Q |
307 |
aaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtcttttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41440000 |
aaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtcttttt |
41440099 |
T |
|
| Q |
407 |
taa |
409 |
Q |
| |
|
||| |
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|
| T |
41440100 |
taa |
41440102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 41452869 - 41453270
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41452869 |
cagaaaccaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
41452968 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|| || |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41452969 |
gtttaataatgcaagaaaagcagtaaaaagaatctctttccaccctgagattatcaatgacttaactaacttaagtgtggttactctattgactgcacca |
41453068 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
41453069 |
caatcagcttcaagtttttctctaaaaattggaaaagctcctaccacactatctccactatctagctgaggaacatcctcaaggtctaagtttttcttat |
41453168 |
T |
|
| Q |
307 |
aaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtcttttt |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41453169 |
aaccaaatgctataagtggtcccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtctcttt |
41453268 |
T |
|
| Q |
407 |
ta |
408 |
Q |
| |
|
|| |
|
|
| T |
41453269 |
ta |
41453270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 14241855 - 14242250
Alignment:
| Q |
8 |
agaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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|
| T |
14241855 |
agaaaccaacacatagccttgattctcatataacctttttccgtcaatgtattgaacaaaagaatcaataagataaggaccaacataagtagaaaaagtg |
14241954 |
T |
|
| Q |
108 |
ttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcaccac |
207 |
Q |
| |
|
|| | |||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
14241955 |
tttaccaatgcaagaaaagcagtgataagaatttctttccaccctgagattatcaatgacttaaccaacttaagtgtggttactctattgattgcaccac |
14242054 |
T |
|
| Q |
208 |
aatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttata |
307 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| |
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|
| T |
14242055 |
aatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatctagctgaggaacatcctcaaggtctaacgtcttcttatt |
14242154 |
T |
|
| Q |
308 |
accaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtctt |
403 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||| |
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|
| T |
14242155 |
gccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttgaaaaaggagtaacagtgtcactccctttagtctt |
14242250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 14371466 - 14371073
Alignment:
| Q |
8 |
agaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagtt |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||| |
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|
| T |
14371466 |
agaaaccaacacatagccttgattctcatatagcctttttccatcaaggtattgaacaaaagaatcaataagataagggccaacataagtagaaaaagtg |
14371367 |
T |
|
| Q |
108 |
ttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcaccac |
207 |
Q |
| |
|
|| | |||| |||| ||||||||| || ||||||||| |||||||||||| || |||||||| || |||||||||||||||||||||| |||||||| |
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|
| T |
14371366 |
tttaccaatgcaagagaagcagtgataaaaatctcttttttccctgagattatcaaagacttaaccaatttaagtgtggttactctattgattgcaccac |
14371267 |
T |
|
| Q |
208 |
aatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttata |
307 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
14371266 |
aatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatctagctgaggaacatcctcaaggtctaacgtcttcttatt |
14371167 |
T |
|
| Q |
308 |
accaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaaaaaggggtaacagtgtcactccctttagtc |
401 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||| | |||||||| | |||||||||||||||||||||| |
|
|
| T |
14371166 |
gccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaaatccagcatttgaaaaaggagcaacagtgtcactccctttagtc |
14371073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 21111287 - 21111625
Alignment:
| Q |
7 |
cagaaacaaacacatagccttgattctcgtatagcctttttccatcaaggtattgaacaaaagagtcaataagataaggaccaacataagaagcaaaagt |
106 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
21111287 |
cagaaaccaacacatagctttgattctcatatagcctttt-ccatcaagataatgaacaaaagagtcaataagttaaggaccaccataagaagcaaaatt |
21111385 |
T |
|
| Q |
107 |
tttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaactaacttaagtgtggttactctattgactgcacca |
206 |
Q |
| |
|
|| || |||| ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
21111386 |
gtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtgtggt-----cattgactgcacca |
21111480 |
T |
|
| Q |
207 |
caatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctagctgaggaatatcctcaaggtctaaggttttcttat |
306 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||| ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| |||||||| |
|
|
| T |
21111481 |
caatcagcttcaagtttttctgaaaaagttggaaaaactcaaaccacactatctccagtatctagctaagggacatcctcaatgtctaaggctttcttat |
21111580 |
T |
|
| Q |
307 |
aaccaaatgctataagtggttccacccaagtgaaagtgagaagac |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21111581 |
tgccaaatgctataagtggtcccacccaagtgaaagtgagaagac |
21111625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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