View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1849_low_1 (Length: 482)
Name: NF1849_low_1
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849_low_1 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 107 - 463
Target Start/End: Original strand, 32254006 - 32254364
Alignment:
| Q |
107 |
gcttgttgtagagaacaaaaaagaatggaaattcgaagttgatccaaacctgccgatgatggttcgcatggctaacctatgtgttgttggtggtttttct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254006 |
gcttgttgtagagaacaaaaaagaatggaaattcgaagttgatccaaacctgccgatgatggttcgcatggctaacctatgtgttgttggtggtttttct |
32254105 |
T |
|
| Q |
207 |
gtgaatggagtagctgagattcacagtgagattgtaaaagaggaagtttttaatgaattttacgaggtatcaaaatcaacagattctttttatgttaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254106 |
gtgaatggagtagctgagattcacagtgagattgtaaaagaggaagtttttaatgaattttacgaggtatcaaaatcaacagattctttttatgttaata |
32254205 |
T |
|
| Q |
307 |
tgaac--aannnnnnnngcaattagtggtatgtacatccataaaatatgatattcattaattttctctgtcattgaattgacagttgtggcctgaaaaat |
404 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254206 |
tgaactaatttttttttgcaattagtggtatgtacatccataaaatatgatattcattaattttctctgtcattgaattgacagttgtggcctgaaaaat |
32254305 |
T |
|
| Q |
405 |
tccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcccgac |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254306 |
tccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcccgac |
32254364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 459
Target Start/End: Complemental strand, 11004 - 10931
Alignment:
| Q |
386 |
cagttgtggcctgaaaaattccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcc |
459 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||| |||||||| || ||||||||| | ||||||||||| |
|
|
| T |
11004 |
cagttgtggcctgagaaattccaaaacaaaacaaatggtgtgacaccaaggagatggatcaggttctgtaatcc |
10931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University