View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1849_low_2 (Length: 391)
Name: NF1849_low_2
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 6151576 - 6151938
Alignment:
| Q |
11 |
agataatactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaacc |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151576 |
agatattactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaacc |
6151675 |
T |
|
| Q |
111 |
aacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaagtgtatcgtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
6151676 |
aacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggacaaatattagcattatcaatggaggacccagaattgtattgtt |
6151775 |
T |
|
| Q |
211 |
catcccggttattggaggacaaactggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151776 |
catcccggttattggaggacaaactggagctagacctactgaacctgttgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaat |
6151875 |
T |
|
| Q |
311 |
gtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgat |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151876 |
gtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgat |
6151938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 373
Target Start/End: Original strand, 6145178 - 6145518
Alignment:
| Q |
33 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
132 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| || ||| |
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| T |
6145178 |
tgatatatggttgttgttatggcgtgcatgcaggtaagaagctataaaatatggccaaccaataccattttggaaaccaacgtaatgaagaaagtagccc |
6145277 |
T |
|
| Q |
133 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaagtgtatcgtccatcccggttattggaggacaa |
232 |
Q |
| |
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| ||||| |||||| |||||| ||||||||||| ||||||| ||||||||||||||||| | |||||| | ||||||| |||| ||||||||||||| |
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| T |
6145278 |
atatcgtaatgcagcatatcttagactttttggatcaaatattcgcattatcaatggaggatcaagaagtctgtcgtccaccccgactattggaggacaa |
6145377 |
T |
|
| Q |
233 |
actggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattca |
332 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
6145378 |
actggagctggacctactgaacctgctgcaagatctgattatccaagaagtggagttgttgcaggaaacaatagtaatgtgaattccatttcgtcattca |
6145477 |
T |
|
| Q |
333 |
gcgatggaattaaccccactgctactggtactagaaatgat |
373 |
Q |
| |
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|||||||| |||| ||||| ||| ||||||||| |||||| |
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|
| T |
6145478 |
acgatggaactaacaccactactattggtactaggaatgat |
6145518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 373
Target Start/End: Original strand, 6125739 - 6126099
Alignment:
| Q |
33 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaa--- |
129 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
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| T |
6125739 |
tgatatatggttgttgttatggagtgcatgtaggaaagaagctataaaatatggccaaccaataccgtttaggaaaccagcataatgaagaaattaaaga |
6125838 |
T |
|
| Q |
130 |
--cccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaa---------------gtgtatcgtcca |
212 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||| |||||| |||||||||||| |||| | |||| |||| |||||| |
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|
| T |
6125839 |
agcccatattgtaatgcagtatatctaagactttttggatcgaatatttgcattatcaatgaaggatcgagaaatgaaggatcgagaagtgtgccgtcca |
6125938 |
T |
|
| Q |
213 |
tcccggttattggaggacaaactggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgt |
312 |
Q |
| |
|
||| | ||| |||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| | |||||| |||||| | ||||||||| |
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|
| T |
6125939 |
tcctgactatcggaggataaactggagctagacttactgaacctgctggaggatctaattatcaaagaagtgcatttgttggaggaaataatagtaatgt |
6126038 |
T |
|
| Q |
313 |
gaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgat |
373 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| | ||| ||||||||| |||||| |
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|
| T |
6126039 |
gaattccatttcgtcattcaacgatgaaattaacaccattactattggtactaggaatgat |
6126099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 28755297 - 28755444
Alignment:
| Q |
33 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
132 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| || | |||||||| | | | |
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| T |
28755297 |
tgatatatggttgttgttatgtagtgcatgcaggtaagaagctacaatctatggccaaccaatatcgtttaggaaaccgtcagaatgaagaaaggatctc |
28755396 |
T |
|
| Q |
133 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcat |
180 |
Q |
| |
|
| ||| ||||||| ||||| ||| |||||||||| |||||||||||| |
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|
| T |
28755397 |
atatcatgatgcaatatatttaatactttttgggtcaaatattagcat |
28755444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 373
Target Start/End: Complemental strand, 33803100 - 33802996
Alignment:
| Q |
269 |
gattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaa |
368 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||| |||||||||| |||||| |||| ||||||| ||||| ||||||| ||||| |||||||| |||| | |
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| T |
33803100 |
gattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtcattcaacgatgaaattaacaccactactactggtgctagga |
33803001 |
T |
|
| Q |
369 |
atgat |
373 |
Q |
| |
|
||||| |
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|
| T |
33803000 |
atgat |
33802996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 373
Target Start/End: Complemental strand, 33731721 - 33731617
Alignment:
| Q |
269 |
gattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaa |
368 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||| |||||||||| ||||| |||| ||||||| ||||| ||||||| ||||| |||||||| |||| | |
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|
| T |
33731721 |
gattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattctgtttcgtcattcaacgatgaaattaacaccactactactggtgctagga |
33731622 |
T |
|
| Q |
369 |
atgat |
373 |
Q |
| |
|
||||| |
|
|
| T |
33731621 |
atgat |
33731617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 33732023 - 33731931
Alignment:
| Q |
33 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaa |
125 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||| | || ||||||||||||||| ||||||||||| | |||| |||||||| |
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|
| T |
33732023 |
tgatatatggttgctgttatggtgtgcatgcaggtaagaagttgcaatctatggccaaccaatatcgtttaggaaatcgtcataatgaagaaa |
33731931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 33803402 - 33803327
Alignment:
| Q |
33 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| |||||| | || ||||||||||||||| ||||||||||| |
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|
| T |
33803402 |
tgatatatggttgttgttatggtgtgcatgcaggcaagaagttgcaatctatggccaaccaatatcgtttaggaaa |
33803327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 6138334 - 6138412
Alignment:
| Q |
253 |
acctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattc |
331 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||| | ||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
6138334 |
acctgctgtaggatatgactaccaaagaagtggacctcctgcaggaaatagtagtaatgctaattccatttcatcattc |
6138412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 28755803 - 28755712
Alignment:
| Q |
86 |
gccaaccaataccgtttaggaaaccaacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagca |
179 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||| | || | || |||||||| ||||| |||| |||||||| ||||||||||| |
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|
| T |
28755803 |
gccaaccaataccgtttaggaaaccatcagaatgaagaaaggagcctatattgtgatgcaatatatttaag--tttttgggtcaaatattagca |
28755712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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