View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1849_low_3 (Length: 279)
Name: NF1849_low_3
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1849_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 3639635 - 3639899
Alignment:
| Q |
1 |
tctgccacaatttcacaagtgggcaaaatctcatacttttttaatctttggagtaaaatacatcttcagtttactaataaataaattattaatcatagcc |
100 |
Q |
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| T |
3639635 |
tctgccacaatttcacaagtgggcaaaatctcatacttttttaatctttggagtaaaatacatcttcagtttactaataaataaattattaatcatagcc |
3639734 |
T |
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| Q |
101 |
ctcatttgtctgacattaaaaatcccaaacacaccttagtgtataacatgaaccttactagtaattagtaactgattatactaatcttatcttactataa |
200 |
Q |
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| T |
3639735 |
ctcatttgtctgacattaaaaatcccaaacacaccttagtgtataacatgaaccttactagtaattagtaactgattatactaatcttatcttactataa |
3639834 |
T |
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| Q |
201 |
tgtaatatctctgttagaaaaaggggagtcaaaatcatgagtgtggcaaattagaggaactaaat |
265 |
Q |
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| T |
3639835 |
tgtaatatctctgttagaaaaaggggagtcaaaatcatgagtgtggcaaattagaggaactaaat |
3639899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 3640815 - 3640979
Alignment:
| Q |
47 |
tttggagtaaaatacatcttcagtttactaataaataaattattaatcatagccctcatttgtctgacattaaaaatcccaaacacaccttagtgtataa |
146 |
Q |
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| T |
3640815 |
tttggaggataatatatcttcagtttactaataaataaattattaatcatatccctcatttgtctgacattaaaaatcccaaacacaccttagcgtataa |
3640914 |
T |
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| Q |
147 |
catgaaccttactagtaattagtaactgattatactaatcttatcttactataatgtaatatctctgtta |
216 |
Q |
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| T |
3640915 |
gatgaaccttactagtaattagtaactgattatacta-----atcttactataatgtaatatctctgtta |
3640979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 3639905 - 3639954
Alignment:
| Q |
216 |
agaaaaaggggagtcaaaatcatgagtgtggcaaattagaggaactaaat |
265 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
3639905 |
agaaaaaggggagtcgaaatcatgagtgtgccaaattagaggaactaaat |
3639954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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