View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1849_low_5 (Length: 239)

Name: NF1849_low_5
Description: NF1849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1849_low_5
NF1849_low_5
[»] chr8 (15 HSPs)
chr8 (152-233)||(7021774-7021855)
chr8 (20-151)||(7021911-7022032)
chr8 (26-74)||(17841867-17841915)
chr8 (26-74)||(31347799-31347847)
chr8 (26-74)||(40780146-40780194)
chr8 (17-76)||(8453832-8453891)
chr8 (26-77)||(35353038-35353089)
chr8 (20-74)||(15187560-15187614)
chr8 (26-74)||(6108250-6108298)
chr8 (26-74)||(20091818-20091866)
chr8 (26-74)||(24211570-24211618)
chr8 (26-74)||(32064745-32064793)
chr8 (26-74)||(34665382-34665430)
chr8 (26-74)||(39772818-39772866)
chr8 (26-74)||(42755059-42755107)
[»] chr7 (10 HSPs)
chr7 (26-76)||(15238380-15238430)
chr7 (26-74)||(18036978-18037026)
chr7 (16-75)||(48880934-48880993)
chr7 (26-76)||(4974752-4974802)
chr7 (16-74)||(15329273-15329331)
chr7 (26-74)||(15577867-15577915)
chr7 (26-74)||(35444558-35444606)
chr7 (26-74)||(37477097-37477145)
chr7 (26-74)||(42611811-42611859)
chr7 (26-74)||(45637712-45637760)
[»] chr5 (13 HSPs)
chr5 (26-76)||(17545702-17545752)
chr5 (26-76)||(22913071-22913121)
chr5 (20-79)||(4434018-4434077)
chr5 (30-76)||(3522027-3522073)
chr5 (24-74)||(14138668-14138718)
chr5 (26-79)||(33584346-33584399)
chr5 (17-74)||(12614741-12614798)
chr5 (26-74)||(4892202-4892250)
chr5 (26-74)||(6043528-6043576)
chr5 (26-70)||(8145379-8145423)
chr5 (26-62)||(10458409-10458445)
chr5 (26-78)||(11361148-11361200)
chr5 (26-74)||(25398238-25398286)
[»] chr3 (8 HSPs)
chr3 (26-78)||(8362062-8362114)
chr3 (26-73)||(9797046-9797093)
chr3 (20-74)||(34482921-34482975)
chr3 (26-74)||(3137431-3137479)
chr3 (16-76)||(6041882-6041942)
chr3 (20-74)||(8320595-8320649)
chr3 (20-77)||(3456061-3456118)
chr3 (20-76)||(48160903-48160959)
[»] chr6 (6 HSPs)
chr6 (20-74)||(9752256-9752309)
chr6 (26-65)||(11548605-11548644)
chr6 (16-77)||(17176028-17176089)
chr6 (26-74)||(28675148-28675196)
chr6 (26-74)||(33695344-33695392)
chr6 (26-74)||(33696696-33696744)
[»] chr1 (11 HSPs)
chr1 (16-78)||(32000274-32000336)
chr1 (20-77)||(36966719-36966776)
chr1 (20-79)||(19015399-19015458)
chr1 (20-75)||(37821845-37821900)
chr1 (26-76)||(9910310-9910360)
chr1 (26-74)||(40273702-40273750)
chr1 (37-75)||(52329318-52329356)
chr1 (26-75)||(40214987-40215036)
chr1 (26-78)||(6883483-6883535)
chr1 (26-74)||(25973414-25973462)
chr1 (26-74)||(44094698-44094746)
[»] chr2 (8 HSPs)
chr2 (20-74)||(13354846-13354900)
chr2 (20-78)||(21936077-21936135)
chr2 (26-74)||(7475525-7475573)
chr2 (26-74)||(23268079-23268127)
chr2 (26-72)||(21393705-21393751)
chr2 (159-220)||(10541770-10541831)
chr2 (26-74)||(33380207-33380255)
chr2 (26-74)||(43330912-43330960)
[»] chr4 (14 HSPs)
chr4 (26-79)||(46441839-46441892)
chr4 (26-74)||(24128239-24128287)
chr4 (26-74)||(24392667-24392715)
chr4 (26-74)||(33530705-33530753)
chr4 (26-74)||(47290066-47290114)
chr4 (26-77)||(2624834-2624885)
chr4 (26-77)||(22199258-22199309)
chr4 (26-76)||(49387905-49387955)
chr4 (26-79)||(36073345-36073398)
chr4 (26-74)||(10442806-10442854)
chr4 (26-74)||(21802339-21802387)
chr4 (26-74)||(31078836-31078884)
chr4 (26-74)||(36072947-36072995)
chr4 (26-74)||(44893426-44893474)
[»] scaffold0471 (1 HSPs)
scaffold0471 (26-74)||(12842-12890)
[»] scaffold0178 (1 HSPs)
scaffold0178 (16-75)||(11620-11679)
[»] scaffold0204 (1 HSPs)
scaffold0204 (26-74)||(4396-4444)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 7021855 - 7021774
Alignment:
Q  152 atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021855 atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatg 7021774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 7022032 - 7021911
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcataatgaaatctattttttgcttttcaaacaaacaaaagaagaca 119  Q
    ||||| ||||||||||||||||||| ||| | |||||||||||||           ||||||||||||||||||| ||||||||||||||||||||||||    
T  7022032 catatcattcttgaatttttcttgagaaaatctttcttgatatatt----------taatgaaatctattttttgtttttcaaacaaacaaaagaagaca 7021943  T
Q  120 ataacgtgcgttacgtatatgacatgtacagt 151  Q
    ||||||||||||||||||||||||||||||||    
T  7021942 ataacgtgcgttacgtatatgacatgtacagt 7021911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 17841867 - 17841915
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  17841867 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 17841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 31347799 - 31347847
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  31347799 attcttgaatttttcttgagaaaatatttcttgatatatagcattgctc 31347847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 40780146 - 40780194
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  40780146 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 40780194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 8453891 - 8453832
Alignment:
Q  17 tgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    |||||| | ||||||||| ||||||||||||| | |||||||||||||| ||||| ||||    
T  8453891 tgtcatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgttcat 8453832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 35353089 - 35353038
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    |||||| || ||||||||||||| | |||||||||||||| |||||||||||    
T  35353089 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcata 35353038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 15187614 - 15187560
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||| ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  15187614 catatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 6108250 - 6108298
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| || ||||||| ||||| | |||||||||||||||||||||||    
T  6108250 attcttaaaattttcttaaaaaaatctttcttgatatataacattgctc 6108298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 20091818 - 20091866
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  20091818 attcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 24211570 - 24211618
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  24211570 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 32064793 - 32064745
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  32064793 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 32064745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 34665430 - 34665382
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  34665430 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 39772818 - 39772866
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| |||| |||| ||| | |||||||||||||||||||||||    
T  39772818 attcttgaaatttttttgataaaatatttcttgatatataacattgctc 39772866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 42755059 - 42755107
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  42755059 attcttgaaattttcttgataaaatctttcttgatatatatcattgctc 42755107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 15238430 - 15238380
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  15238430 attcttgaatttttcttgagaaattttttcttgatatatagcattgctcat 15238380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 18037026 - 18036978
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| |||||||||||||||| | |||||||||||||| ||||||||    
T  18037026 attcttaaatttttcttgaaaaaatctttcttgatatatatcattgctc 18036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 48880934 - 48880993
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctca 75  Q
    ||||||| | ||||||||| ||||||||| ||| | |||||||||||||| |||||||||    
T  48880934 ctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 48880993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 4974752 - 4974802
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||||    
T  4974752 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 4974802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 15329331 - 15329273
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||| | ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  15329331 ctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15329273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 15577867 - 15577915
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  15577867 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 35444606 - 35444558
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||| ||||||| ||||||||    
T  35444606 attcttgaaattttcttgaaaaaatctttcttaatatatagcattgctc 35444558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 37477097 - 37477145
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| |||||||||||| ||| | |||||||||||||| ||||||||    
T  37477097 attcttaaatttttcttgagaaaatctttcttgatatatagcattgctc 37477145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 42611859 - 42611811
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  42611859 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 45637760 - 45637712
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  45637760 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 45637712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 17545702 - 17545752
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  17545702 attcttgaatttttcttgagaaattttttcttgatatatagcattgctcat 17545752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 22913071 - 22913121
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  22913071 attcttgaatttttcttgaaaaaatctttcttgatatatagcattgctcat 22913121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 4434018 - 4434077
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcataat 79  Q
    ||||| ||||||||| ||||||| ||||| | |||||||||||||| |||||||||||||    
T  4434018 catatcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataat 4434077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3522027 - 3522073
Alignment:
Q  30 ttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||    
T  3522027 ttgaaattttcttgaaaaaatctttcttgatatataacattgctcat 3522073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 14138718 - 14138668
Alignment:
Q  24 taattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  14138718 taattcttgaaattttcttgataaaatctttcttgatatataacattgctc 14138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 33584346 - 33584399
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataat 79  Q
    |||||| || ||||||||||||| | |||||||||||||| |||||||||||||    
T  33584346 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcataat 33584399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 12614741 - 12614798
Alignment:
Q  17 tgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| | |||||||||| |||||||| ||| | |||||||||||||| ||||||||    
T  12614741 tgtcatgtcattcttgaatctttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 4892250 - 4892202
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| || ||||||||||||| | |||||||||||||| ||||||||    
T  4892250 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 4892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 6043528 - 6043576
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  6043528 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6043576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 8145423 - 8145379
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacatt 70  Q
    ||||||||| ||||||||| ||| | |||||||||||||||||||    
T  8145423 attcttgaaattttcttgataaaatctttcttgatatataacatt 8145379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 10458445 - 10458409
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatat 62  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  10458445 attcttgaatttttcttgataaaatttttcttgatat 10458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 11361148 - 11361200
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataa 78  Q
    |||||| || ||||||||| ||| | |||||||||||||| ||||||||||||    
T  11361148 attcttaaaattttcttgataaaatctttcttgatatatagcattgctcataa 11361200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 25398286 - 25398238
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| || ||||||||||||| | |||||||||||||| ||||||||    
T  25398286 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 8362062 - 8362114
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataa 78  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  8362062 attcttgaatttttcttgaaattttttttcttgatatatagcattgctcataa 8362114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 9797046 - 9797093
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgct 73  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  9797046 attcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 34482921 - 34482975
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  34482921 catatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 34482975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 3137431 - 3137479
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  3137431 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 3137479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 6041942 - 6041882
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||| | ||||||||| ||||||||| ||| | |||||||||||||| ||||||||||    
T  6041942 ctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 6041882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 8320595 - 8320649
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||| |||||| || ||||||||| ||| | |||||||||||||||||||||||    
T  8320595 catatcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 3456118 - 3456061
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    ||||| |||||| || ||||||||| ||| | |||||||||||||| |||||||||||    
T  3456118 catatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcata 3456061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 48160959 - 48160903
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||| |||||| || ||||||||| ||| | |||||||||||||| ||||||||||    
T  48160959 catatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 48160903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 9752256 - 9752309
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9752256 catatcattcttgaatttttcttgataa-ttttttcttgatatataacattgctc 9752309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 11548605 - 11548644
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatata 65  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  11548605 attcttgaatttttcttgagaaaatttttcttgatatata 11548644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 17176028 - 17176089
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    ||||||| | ||||||||| |||| |||| ||| | |||||||||||||| |||||||||||    
T  17176028 ctgtcatgtcattcttgaaattttattgataaaatctttcttgatatatagcattgctcata 17176089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 28675196 - 28675148
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  28675196 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 28675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 33695344 - 33695392
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  33695344 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33695392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 33696744 - 33696696
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  33696744 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33696696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 32000274 - 32000336
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcataa 78  Q
    ||||||| | ||||||||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  32000274 ctgtcatgtcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctcataa 32000336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 36966719 - 36966776
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||||| |||||||||||    
T  36966719 catatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcata 36966776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 19015458 - 19015399
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcataat 79  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||||| |||||||| ||||    
T  19015458 catatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcttaat 19015399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 37821845 - 37821900
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctca 75  Q
    ||||| ||||||||| ||||||||||||| | |||||||||||||| |||||||||    
T  37821845 catatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 37821900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 9910310 - 9910360
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||||    
T  9910310 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 9910360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 40273750 - 40273702
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||||||||||||||||| | ||||||||||| || ||||||||    
T  40273750 attcttgaatttttcttgaaaaaatctttcttgatatctagcattgctc 40273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 52329356 - 52329318
Alignment:
Q  37 tttcttgaaaaattttttcttgatatataacattgctca 75  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  52329356 tttcttgataaattctttcttgatatataacattgctca 52329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 40215036 - 40214987
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctca 75  Q
    ||||||||| ||||||||| ||| | |||||||||||||| |||||||||    
T  40215036 attcttgaaattttcttgataaaatctttcttgatatatagcattgctca 40214987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 6883535 - 6883483
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataa 78  Q
    ||||||||| ||||||| ||||| | |||||| ||||||| ||||||||||||    
T  6883535 attcttgaaattttcttaaaaaaatctttcttaatatatagcattgctcataa 6883483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 25973462 - 25973414
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  25973462 attcttgaaattttcatgataaaatctttcttgatatataacattgctc 25973414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 44094746 - 44094698
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  44094746 attcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 13354900 - 13354846
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||| ||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  13354900 catatcattcttgaaattttcttgataaaatctttcttgatatataacattgctc 13354846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21936135 - 21936077
Alignment:
Q  20 catataattcttgaatttttcttgaaaaattttttcttgatatataacattgctcataa 78  Q
    ||||| ||||||||| ||||||||| ||| | |||||||||||||| ||||||||||||    
T  21936135 catatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcataa 21936077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 7475525 - 7475573
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  7475525 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 7475573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 23268079 - 23268127
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  23268079 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 23268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 21393705 - 21393751
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgc 72  Q
    |||||| |||||||||||| ||| |||||||||||||||| ||||||    
T  21393705 attcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 10541831 - 10541770
Alignment:
Q  159 actttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatat 220  Q
    |||||||||||||||||  | || |||||| ||||||||||| | ||||||||| |||||||    
T  10541831 actttcaataactctttgtagaaggcgaattaaatcaatccaactattgaatcatcttatat 10541770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 33380255 - 33380207
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| || ||||||||||||| | |||||||||||||| ||||||||    
T  33380255 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 43330960 - 43330912
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||||||||||| |||| ||| | |||||||||||||| ||||||||    
T  43330960 attcttgaattttttttgagaaaatctttcttgatatatagcattgctc 43330912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46441892 - 46441839
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataat 79  Q
    ||||||||| ||||||| ||||| | |||||||||||||| |||||||||||||    
T  46441892 attcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataat 46441839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24128287 - 24128239
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  24128287 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 24128239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24392715 - 24392667
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  24392715 attcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 24392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 33530705 - 33530753
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  33530705 attcttgaatttttcttgataaaatctttcttgatatatagcattgctc 33530753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 47290114 - 47290066
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  47290114 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 47290066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 2624885 - 2624834
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    ||||||||| ||||||||| ||| | |||||||||||||| |||||||||||    
T  2624885 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcata 2624834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 22199309 - 22199258
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcata 77  Q
    ||||||||| ||||||||| ||| | |||||||||||||| |||||||||||    
T  22199309 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcata 22199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 49387905 - 49387955
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcat 76  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||||    
T  49387905 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 49387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 36073398 - 36073345
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctcataat 79  Q
    ||||||||| ||||||||||||| | |||||||||||||| |||| ||| ||||    
T  36073398 attcttgaaattttcttgaaaaaatctttcttgatatatagcattcctcttaat 36073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 10442806 - 10442854
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  10442806 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 10442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 21802339 - 21802387
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  21802339 attcttgaaattttcttgataaaatatttcttgatatatagcattgctc 21802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 31078836 - 31078884
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  31078836 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 31078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 36072995 - 36072947
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||| ||| | |||||||||||||| ||||||||    
T  36072995 attcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 44893474 - 44893426
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| |||| |||||||| | |||||||||||||| ||||||||    
T  44893474 attcttgaaatttttttgaaaaaatctttcttgatatatagcattgctc 44893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 12890 - 12842
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  12890 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 12842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11679 - 11620
Alignment:
Q  16 ctgtcatataattcttgaatttttcttgaaaaattttttcttgatatataacattgctca 75  Q
    ||||||| | ||||||||| ||||||||| ||| | |||||||||||||| |||||||||    
T  11679 ctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 4444 - 4396
Alignment:
Q  26 attcttgaatttttcttgaaaaattttttcttgatatataacattgctc 74  Q
    |||||| || ||||||||||||| | |||||||||||||| ||||||||    
T  4444 attcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 4396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University