View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18500_high_16 (Length: 357)

Name: NF18500_high_16
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18500_high_16
NF18500_high_16
[»] chr3 (33 HSPs)
chr3 (14-334)||(22615411-22615731)
chr3 (119-308)||(21937173-21937362)
chr3 (143-315)||(22657347-22657519)
chr3 (132-329)||(22115084-22115281)
chr3 (132-329)||(22186987-22187184)
chr3 (119-315)||(30989562-30989758)
chr3 (132-311)||(21945641-21945820)
chr3 (132-315)||(22028013-22028196)
chr3 (132-329)||(22052732-22052929)
chr3 (171-295)||(22208053-22208177)
chr3 (132-295)||(22179450-22179613)
chr3 (132-329)||(22034516-22034713)
chr3 (132-295)||(21930454-21930617)
chr3 (121-329)||(22104722-22104930)
chr3 (133-303)||(22621185-22621355)
chr3 (133-315)||(22648429-22648611)
chr3 (124-205)||(22458751-22458832)
chr3 (124-205)||(22481732-22481813)
chr3 (132-303)||(22436904-22437075)
chr3 (132-303)||(22630709-22630880)
chr3 (133-281)||(18967258-18967404)
chr3 (140-313)||(22468226-22468399)
chr3 (14-92)||(22115330-22115408)
chr3 (14-92)||(18967130-18967208)
chr3 (164-270)||(22431454-22431560)
chr3 (162-276)||(2749082-2749196)
chr3 (14-92)||(21937398-21937476)
chr3 (14-60)||(21945901-21945947)
chr3 (14-92)||(22358145-22358223)
chr3 (179-313)||(22368229-22368363)
chr3 (14-92)||(22442882-22442960)
chr3 (14-60)||(22657209-22657255)
chr3 (14-92)||(30989448-30989526)
[»] chr1 (7 HSPs)
chr1 (166-312)||(34975398-34975544)
chr1 (166-311)||(34989234-34989379)
chr1 (153-315)||(34980173-34980337)
chr1 (143-207)||(2305766-2305830)
chr1 (14-60)||(34975659-34975705)
chr1 (14-60)||(34980439-34980485)
chr1 (14-60)||(34989494-34989540)
[»] chr8 (1 HSPs)
chr8 (168-295)||(27294581-27294708)
[»] chr4 (1 HSPs)
chr4 (133-193)||(29610842-29610902)
[»] chr7 (2 HSPs)
chr7 (16-60)||(872870-872914)
chr7 (16-60)||(1234147-1234191)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 22615411 - 22615731
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccatttctgtagtaatatcccgaggca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22615411 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccatttctgtaggaatatcccgaggca 22615510  T
Q  114 aagacttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615511 aagacttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaac 22615610  T
Q  214 ctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615611 ctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaac 22615710  T
Q  314 cagccgatcaatctttctcta 334  Q
    |||||||||||||||||||||    
T  22615711 cagccgatcaatctttctcta 22615731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 308
Target Start/End: Complemental strand, 21937362 - 21937173
Alignment:
Q  119 ttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctcct 218  Q
    |||| ||||||| ||||||||||| ||||||||||||| | |   |||| ||||||||||||||||||||||||||||||||||||||||   || ||||    
T  21937362 ttgtaaaacttgagcaacatgtccttcaacaacccttcaacatcatatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatcct 21937263  T
Q  219 tgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcctttta 308  Q
    |||| |||||| | ||||| || ||||||||||| || |||||||||||||| |||||||| ||||||||||||||| | ||||| ||||    
T  21937262 tgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctctgcccttcccttta 21937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 22657347 - 22657519
Alignment:
Q  143 ctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaa 242  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||  |||||| ||||| |||||||| || || ||||    
T  22657347 ctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaa 22657446  T
Q  243 gagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 315  Q
    |||| ||||| || ||||||||||||||||| ||||| |  ||||||||||||  |||||| |||||||||||    
T  22657447 gagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccctttaccaacca 22657519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 22115281 - 22115084
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    ||||||| ||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||||||||||   |  |||||||| ||||||||    
T  22115281 gcaacatatccctcaacaacccttcaacttcatatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaac 22115182  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatcttt 329  Q
     ||||| |  ||||||||||| || |||||||||||||| |||||||| | ||||||||||||| | ||||| | ||||| |||  | ||||||||||    
T  22115181 tttctttgatagagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatcttt 22115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 22187184 - 22186987
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| ||||||||||||||||||||||||||    |  |||||||| ||||||||    
T  22187184 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaac 22187085  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatcttt 329  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| | ||||||||||||| | ||||| ||||||| |||  | ||||||||||    
T  22187084 tttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaatcaatcttt 22186987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 119 - 315
Target Start/End: Original strand, 30989562 - 30989758
Alignment:
Q  119 ttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctcct 218  Q
    |||| ||||||  ||||||||||||||||||||||||| | | | ||||||||||||||| |||||||||||||||||||||||||||||   || | |     
T  30989562 ttgtaaaactttagcaacatgtccctcaacaacccttcaacagtatatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcc 30989661  T
Q  219 tgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 315  Q
    || | |||||||| ||||| | ||||||||||||||| ||||||||||| || || ||||| |  || ||||||||  ||||||| |||||||||||    
T  30989662 tgttgtcaaaaactttcttcgtaagagtggttttaccttgccctcccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaacca 30989758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 311
Target Start/End: Complemental strand, 21945820 - 21945641
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    ||||||||||||||||||| ||||| | |   |||||||||||||| |||||||||||| ||||||||||||||| |   || |||||||| ||||||||    
T  21945820 gcaacatgtccctcaacaatccttcaacatcatatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaac 21945721  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttacca 311  Q
     |||||||| ||||||||||| || |||||||||||||| ||||| || || |||||||||||  | ||||| |||||||    
T  21945720 tttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctcctcccttccctttacca 21945641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 315
Target Start/End: Complemental strand, 22028196 - 22028013
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| ||||||||||||||||||||||||||    |  |||||||| ||||||||    
T  22028196 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaac 22028097  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 315  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||||||| | ||||| | |||||||||    
T  22028096 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaacca 22028013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 22052929 - 22052732
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    ||||||| ||||||||||||||||| | |   ||||||||||||||||| |||||||| ||||||||||| ||||||   |  |||||||| ||||||||    
T  22052929 gcaacatttccctcaacaacccttcaacatcatatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaac 22052830  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatcttt 329  Q
     |||||||| ||||| ||||| || |||||||||||||| |||| ||| || |||||||||||| | ||||| ||||||| |||  | ||||||||||    
T  22052829 tttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatcttt 22052732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 22208177 - 22208053
Alignment:
Q  171 gagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcc 270  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||| ||||| |||||||| | |||||||||||| |||||||| ||||||||||| ||    
T  22208177 gagacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatccc 22208078  T
Q  271 caccacagagacaacagtgcgctct 295  Q
     ||||| |||||||||||| |||||    
T  22208077 aaccaccgagacaacagtgagctct 22208053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 22179613 - 22179450
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| |||||||||||||||||||||||||||   |  |||||||| ||||||||    
T  22179613 gcaacatgtctctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaac 22179514  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctct 295  Q
     |||||||| ||||| ||||| || ||||||||||||||||||||  | || ||||||||||||    
T  22179513 tttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctct 22179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 22034713 - 22034516
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| |||||||||||| |||||||||||||    |  |||||||| ||||||||    
T  22034713 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaac 22034614  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatcttt 329  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||||||| | ||||| | ||||| |||  | ||||||||||    
T  22034613 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatcttt 22034516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 21930617 - 21930454
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    ||||||||||||||||||||||||| | |   |||||||||||||||||||||||||| ||  ||| ||| ||||||   |  |||||||| ||||||||    
T  21930617 gcaacatgtccctcaacaacccttcaacatcatatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaac 21930518  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctct 295  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || ||||||||||||    
T  21930517 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctct 21930454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 22104930 - 22104722
Alignment:
Q  121 gtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttg 220  Q
    ||||| ||| ||||||||||||||||| | |||||| | | | || || || |||||||||||||| ||| |||||||||||||||||   || ||||||    
T  22104930 gtgaagctttcgcaacatgtccctcaaaatcccttcaacattataggactgcgacactgtgatccaaacatgacaatcaaagtgtccaattacatccttg 22104831  T
Q  221 ctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccga 320  Q
    || ||||||||  ||||||| ||||| ||||| || |||||||||||||| ||||| || || |||||||||||| |  |||| ||||||| |||  | |    
T  22104830 ctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaa 22104731  T
Q  321 tcaatcttt 329  Q
    |||||||||    
T  22104730 tcaatcttt 22104722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 303
Target Start/End: Original strand, 22621185 - 22621355
Alignment:
Q  133 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 232  Q
    ||||||||  |||| |||||| ||||||  ||||||||| |||||||||| |||||||||| | || ||||||||    ||||| ||||| || |||||     
T  22621185 caacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc 22621284  T
Q  233 ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 303  Q
    || ||||||||||||| ||| || || ||||||||||| ||||||||||  ||||| |||||| |||||||    
T  22621285 tttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttcc 22621355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 22648429 - 22648611
Alignment:
Q  133 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 232  Q
    ||||||| | |||| |||||||||| ||  |||||||||  ||||| |||||||||||||| | |||||||||||    ||||| ||||| ||||| ||     
T  22648429 caacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgctacctctttgctgtcaaacact 22648528  T
Q  233 ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 315  Q
    ||  |||||||||||||||| ||  |||||||||| || ||||||||||  ||||||||||||  |||||| | |||||||||    
T  22648529 tttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctaccaacca 22648611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 22458751 - 22458832
Alignment:
Q  124 aaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 205  Q
    ||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22458751 aaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22458832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 22481732 - 22481813
Alignment:
Q  124 aaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 205  Q
    ||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22481732 aaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22481813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 22436904 - 22437075
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||| ||||||||||||||   |||| |||||||||||||||||||||||||||||||| |||| ||||| |||    | || |   || | ||||||||    
T  22436904 gcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaac 22437003  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 303  Q
     |||||||| ||||| ||||| || |||||||||||||| || | ||||||||| |  ||||||||||||||    
T  22437004 tttcttggccagagtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttcc 22437075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 22630709 - 22630880
Alignment:
Q  132 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 231  Q
    |||| ||||||||||||||   ||||||| |||||| | ||||||| ||||||||| || ||||||||||||||  |   ||||    | | |||||||     
T  22630709 gcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaat 22630808  T
Q  232 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 303  Q
     |||||||||||||||||||| ||| | ||||||||||| || | ||||||||| ||||| ||| |||||||    
T  22630809 tttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttcc 22630880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 281
Target Start/End: Original strand, 18967258 - 18967404
Alignment:
Q  133 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 232  Q
    ||||||||| || ||||||||||||| |   ||||||||||||||||  ||||||| | |||||| ||||||||||   || |||||| | ||| ||||     
T  18967258 caacatgtcgcttaacaacccttctacatcatatgattgagacactg--atccatataagacaattaaagtgtccaatgacatccttgttgtcagaaact 18967355  T
Q  233 ttcttggcaagagtggttttaccctgccctcccattcccaccacagaga 281  Q
     |||| || ||||| ||||| || |||||||||||||| ||||||||||    
T  18967356 ctctttgctagagttgtttttccttgccctcccattcctaccacagaga 18967404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 313
Target Start/End: Original strand, 22468226 - 22468399
Alignment:
Q  140 tccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttgg 239  Q
    |||||||||||   ||||||| |||||| | ||||||| |||||||||||| |||||||||| |||  |   ||||  | | | |||||||| |||||||    
T  22468226 tccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttgg 22468325  T
Q  240 caagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaac 313  Q
    | | ||||||||| ||| | ||||||||||| || |  |||||||| ||||||||| ||||||| | |||||||    
T  22468326 ctatagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctctaccaac 22468399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 22115408 - 22115330
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||| || |||||  ||||| | |||| ||||||||    
T  22115408 acatcatcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccattt 22115330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 18967130 - 18967208
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    |||||||||||||||||||| |||||||| | | | |||||||||||||| |||||  | |||||| ||| ||||||||    
T  18967130 acatcatcaaacacaacaacatacctcttatcccgtaagtagtttcttacttcatctgtcaatgactctcgatccattt 18967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 22431454 - 22431560
Alignment:
Q  164 tatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctc 263  Q
    |||| |||||||||||||||||||| ||||||||||||||||  |   |||   ||| | |||||||| |||||||  ||||||||||| ||| | ||||    
T  22431454 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 22431553  T
Q  264 ccattcc 270  Q
    |||||||    
T  22431554 ccattcc 22431560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 2749196 - 2749082
Alignment:
Q  162 tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc 261  Q
    |||| |||||||| |||||||  ||  ||||||||||||||||| |  | ||||  ||||| ||||||||   |||||||||||||||||| ||  | ||    
T  2749196 tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc 2749097  T
Q  262 tcccattcccaccac 276  Q
    ||||||||| |||||    
T  2749096 tcccattcctaccac 2749082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 21937476 - 21937398
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    |||||||||||||| | |||||||||||||    ||||||||||||| |  ||||| || |||||||||| ||||||||    
T  21937476 acatcatcaaacacgataacgtacctctttcttcgcaagtagtttctaatttcatccatcaatgaccctcgatccattt 21937398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 21945947 - 21945901
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    ||||||||||| || ||||| |||||||||||||||||||| |||||    
T  21945947 acatcatcaaagacgacaacatacctcttttgctgcaagtaatttct 21945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 22358145 - 22358223
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    |||||||||||||| ||||| ||||| ||||  |||||||||||||| || ||||| | |||||||  || ||||||||    
T  22358145 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccattt 22358223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 22368229 - 22368363
Alignment:
Q  179 gtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacag 278  Q
    |||||||||| ||||||||||||||||  |   ||||  | | | |||||||| |||||||| ||||||||||| ||| | ||||||||||| || |  |    
T  22368229 gtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatgg 22368328  T
Q  279 agacaacagtgcgctctactcttccttttaccaac 313  Q
    ||||||| ||||| | | ||||||| | |||||||    
T  22368329 agacaactgtgcggtgtgctcttccctctaccaac 22368363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 22442882 - 22442960
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    |||||||||||||| ||||| ||||| ||||  |||||||||||||| || ||||| | |||||||  || ||||||||    
T  22442882 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccattt 22442960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 22657209 - 22657255
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||    
T  22657209 acatcatcaaacacaaaaacatacctctttttctgcaagtattttct 22657255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 30989448 - 30989526
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 92  Q
    ||||||||||||||||| || ||||| |||  | ||||||||||||| || |||||  | |||||||||| ||||||||    
T  30989448 acatcatcaaacacaacgacatacctttttaaccgcaagtagtttctcacttcatcagtcaatgaccctcgatccattt 30989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 34975544 - 34975398
Alignment:
Q  166 tgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctccc 265  Q
    |||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || |||||||||||||| || |||||||||    
T  34975544 tgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc 34975445  T
Q  266 attcccaccacagagacaacagtgcgctctactcttccttttaccaa 312  Q
    || || || |||||||  |||||||||||||||||||| ||||||||    
T  34975444 atcccaactacagagatgacagtgcgctctactcttccctttaccaa 34975398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 166 - 311
Target Start/End: Complemental strand, 34989379 - 34989234
Alignment:
Q  166 tgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctccc 265  Q
    |||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || |||||||||||||| || |||||||||    
T  34989379 tgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc 34989280  T
Q  266 attcccaccacagagacaacagtgcgctctactcttccttttacca 311  Q
    || || || |||||||  |||||||||||||||||||| |||||||    
T  34989279 atcccaactacagagatgacagtgcgctctactcttccctttacca 34989234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 153 - 315
Target Start/End: Complemental strand, 34980337 - 34980173
Alignment:
Q  153 cttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggtttt 252  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || ||||||||  ||||    
T  34980337 cttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttt 34980238  T
Q  253 accctgccctcccattcccaccacagaga--caacagtgcgctctactcttccttttaccaacca 315  Q
     || |||||||||||||| || |||||||    |||||||||||||||||||| |||||||||||    
T  34980237 tccttgccctcccattccaactacagagatgacacagtgcgctctactcttccctttaccaacca 34980173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 2305766 - 2305830
Alignment:
Q  143 ctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtcc 207  Q
    ||||||||  |||||||| |||||||||| |||| |||||||||||||||||| |||||||||||    
T  2305766 ctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgtcc 2305830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 34975705 - 34975659
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||    
T  34975705 acatcatcaaacacaaaaacatacctctttttctgcaagtactttct 34975659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 34980485 - 34980439
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||    
T  34980485 acatcatcaaacacaaaaacatacctctttttctgcaagtaatttct 34980439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 34989540 - 34989494
Alignment:
Q  14 acatcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||    
T  34989540 acatcatcaaacacaaaaacatacctctttttctgcaagtactttct 34989494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 27294708 - 27294581
Alignment:
Q  168 attgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccat 267  Q
    |||||||||||||||||||||||||| | |||| ||||||    || |||||||| |||||||| |||||| | ||||||||||| || || ||||||||    
T  27294708 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat 27294609  T
Q  268 tcccaccacagagacaacagtgcgctct 295  Q
    ||| |||||||| || ||||||| ||||    
T  27294608 tcctaccacagaaactacagtgccctct 27294581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 29610842 - 29610902
Alignment:
Q  133 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacga 193  Q
    ||||||| |||| | ||| ||||||||| |||||||||| || ||||||||||||||||||    
T  29610842 caacatgccccttagcaatccttctatattgtatgattgtgatactgtgatccatacacga 29610902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 872870 - 872914
Alignment:
Q  16 atcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||    
T  872870 atcattaaacacaacaacgtatgtcttttgctgcaagtaatttct 872914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 1234147 - 1234191
Alignment:
Q  16 atcatcaaacacaacaacgtacctcttttgctgcaagtagtttct 60  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||    
T  1234147 atcattaaacacaacaacgtatgtcttttgctgcaagtaatttct 1234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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