View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_19 (Length: 323)
Name: NF18500_high_19
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 1750413 - 1750707
Alignment:
| Q |
13 |
gcagagataacaaagaagaaaaagcatgatgaaatcataacaaattttgccaatag----ataataaaaaggaacctacaagaatcatccctcaaatatt |
108 |
Q |
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| T |
1750413 |
gcagagataacaaagaagaaaaagcatgatgaaatcataccaaattttgccaatagatagataataaaaaggaacctacaagaatcatccctcaaatatt |
1750512 |
T |
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| Q |
109 |
atgacaagcaatttccgttcagaccaatgaaaccaaacacaataagttctaaaataaagcacatagtcatgtaattcaaataaaatgattttctaataca |
208 |
Q |
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| T |
1750513 |
atgacaagcaacttccgttcagaccaatgaaaccaaacacaataagttctaaaataaagcacatagtcatgtaattcaaataaaatgattttctaataca |
1750612 |
T |
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| Q |
209 |
ttttaactaatgaggattcaacaatattaagggctaaggctactaatacattttatcatttgattttattctgttcttgaccaaattaaacctaa |
303 |
Q |
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| T |
1750613 |
ttttaactaatgaggattcaacaatattaagggctaaggctactaatacattttatcatttgattttattctgttcttgactaaattaaacctaa |
1750707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 6004832 - 6004871
Alignment:
| Q |
181 |
aattcaaataaaatgattttctaatacattttaactaatg |
220 |
Q |
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| T |
6004832 |
aattcaaaacaaatgattttctaatacattttaactaatg |
6004871 |
T |
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